diff raxml.py @ 13:1fdaae9ba35e draft

planemo upload commit 395859aebe06d24b9ced7b643333e2a2e0eed358-dirty

--- a/raxml.py	Mon Nov 02 15:00:53 2015 -0500
+++ b/raxml.py	Mon Nov 02 15:09:44 2015 -0500
@@ -1,12 +1,7 @@
 #!/usr/bin/env python
 """
 Runs RAxML on a sequence file.
-For use with RAxML version 8.2.3
-
-usage:
-  <!-- raxmlHPC-PTHREADS-SSE3 -T 2 -f c -m GTRGAMMA -F -s  "/Users/om/Downloads/rana.phy"  -n rana_red -w  "/Users/om/Downloads/"  0
-  ## raxmlHPC-PTHREADS-SSE3 -T 2 -m GTRGAMMA -n test -p 323483 -s reduced.phy
-  command>raxmlHPC-HYBRID-SSE3 -T 4 -f ${search_algorithm}  -m ${smodel} -N ${repeats} -o "${html_outfile.files_path}" -s "$input1"
+For use with RAxML version 8.2.4
 """
 import os, shutil, subprocess, sys, optparse, fnmatch, glob