Mercurial > repos > tiagoantao > raxml
comparison raxml.xml @ 25:2d9f1ef9b5cc draft
planemo upload commit 34bbc567766bf5b1986ee91bb3e46c542a45e658-dirty
| author | tiagoantao |
|---|---|
| date | Fri, 13 Nov 2015 09:26:05 -0500 |
| parents | c9fd05a8751e |
| children | efe9ed0d5c4a |
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| 24:c9fd05a8751e | 25:2d9f1ef9b5cc |
|---|---|
| 6 <command interpreter="python">raxml.py | 6 <command interpreter="python">raxml.py |
| 7 ## Required parameters | 7 ## Required parameters |
| 8 ## binary is hard-coded to the pthreads enabled raxml executable | 8 ## binary is hard-coded to the pthreads enabled raxml executable |
| 9 --binary "raxmlHPC-PTHREADS" | 9 --binary "raxmlHPC-PTHREADS" |
| 10 ## (-T) | 10 ## (-T) |
| 11 --threads \${GALAXY_SLOTS:-1} | 11 #if \${GALAXY_SLOTS:-1} != 1: |
| 12 --threads $GALAXY_SLOTS | |
| 13 #end if | |
| 12 ## (-s) | 14 ## (-s) |
| 13 --source $infile | 15 --source $infile |
| 14 ## (-m) | 16 ## (-m) |
| 15 --model_type $search_model_selector.model_type | 17 --model_type $search_model_selector.model_type |
| 16 --base_model $search_model_selector.base_model | 18 --base_model $search_model_selector.base_model |