Mercurial > repos > tiagoantao > barcode_stacks
comparison barcode_sort.xml @ 8:8b0f010d356c draft
planemo upload commit 1af8d398aa035883718d02bb1b9051edb5d10c48-dirty
| author | tiagoantao |
|---|---|
| date | Thu, 31 Mar 2016 10:33:32 -0400 |
| parents | 2c843c8df821 |
| children | 1bce4c0c9369 |
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| 7:2c843c8df821 | 8:8b0f010d356c |
|---|---|
| 1 <tool id="barcode_sort_stacks" name="Barcode sorting for Stacks" version="1.0.1" force_history_refresh="True"> | 1 <tool id="barcode_sort_stacks" name="Barcode sorting for Stacks" version="2.0.0" force_history_refresh="True"> |
| 2 <description>Barcode Sorting with Paired-End reads for Stacks</description> | 2 <description>Barcode Sorting with Paired-End reads for Stacks</description> |
| 3 | 3 |
| 4 <stdio> | 4 <stdio> |
| 5 <exit_code range="1" level="fatal" description="Error in script execution" /> | 5 <exit_code range="1" level="fatal" description="Error in script execution" /> |
| 6 </stdio> | 6 </stdio> |
| 10 barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded $barcode_length $cut_site | 10 barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded $barcode_length $cut_site |
| 11 | 11 |
| 12 </command> | 12 </command> |
| 13 | 13 |
| 14 <inputs> | 14 <inputs> |
| 15 <param name="barcode" format="txt" type="data" label="Barcode file" /> | 15 <param name="barcode" format="text" type="data" label="Barcode file" /> |
| 16 <param name="barcode_length" type="integer" value="6" label="Barcode length" /> | 16 <param name="barcode_length" type="integer" value="6" label="Barcode length" /> |
| 17 <param name="f1" type="data" format="fastq" label="First read FASTQ" /> | 17 <param name="f1" type="data" format="fastq" label="First read FASTQ" /> |
| 18 <param name="f2" type="data" format="fastq" label="Second read FASTQ" /> | 18 <param name="f2" type="data" format="fastq" label="Second read FASTQ" /> |
| 19 <param name="cut_site" type="txt" value="TGCA" label="Cut site" /> | 19 <param name="cut_site" type="txt" value="TGCA" label="Cut site" /> |
| 20 </inputs> | 20 </inputs> |