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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author thomaswollmann
date Mon, 07 Jan 2019 04:57:53 -0500
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98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
thomaswollmann
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1 <?xml version="1.0"?>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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2 <tool name="Projective Transformation" id="ip_projective_transformation" version="0.0.4">
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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3 <description>Projective Transformation</description>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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4 <requirements>
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5 <requirement type="package" version="0.14.0">scikit-image</requirement>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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6 <requirement type="package" version="0.23.4">pandas</requirement>
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7 <requirement type="package" version="1.15.4">numpy</requirement>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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8 <!--<requirement type="package" version="1.1.0">scipy</requirement>-->
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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9 </requirements>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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10 <command>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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11 <![CDATA[
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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12 python '$__tool_directory__/projective_transformation.py'
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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13 '$fixed_image'
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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14 '$moving_image'
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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15 '$warp_matrix'
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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16 ./out.png
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17 && mv ./out.png '$out'
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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18 ]]>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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19 </command>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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20 <inputs>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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21 <param name="moving_image" type="data" format="png" label="Moving Image" />
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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22 <param name="fixed_image" type="data" format="png" label="Fixed Image" />
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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23 <param name="warp_matrix" type= "data" format="csv" label="Warp Matrix" />
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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24 </inputs>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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25 <outputs>
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26 <data format="png" name="out" />
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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27 </outputs>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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28 <tests>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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29 <test>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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30 <param name="fixed_image" value="sample1.png"/>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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31 <param name="moving_image" value="sample2.png"/>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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32 <param name="warp_matrix" value="warp_matrix.csv"/>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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33 <output name="out" value="yam.png" ftype="png" compare="sim_size"/>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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34 </test>
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35 </tests>
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36 <help>
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37 This tool performs a projective transformation of the input (moving) image so that it fits the fixed image.
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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38 </help>
98f55724c8cf planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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39 <citations>
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40 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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41 </citations>
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42 </tool>