comparison points2label.xml @ 0:fae4e354c2da draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0

0:fae4e354c2da

<tool id="points2labelimage" name="Points 2 Label" version="0.1">
  <description>Points to Label Image</description>
  <requirements>
    <requirement type="package" version="1.15.4">numpy</requirement>
    <requirement type="package" version="0.14.0">scikit-image</requirement>
    <requirement type="package" version="0.23.4">pandas</requirement>
  </requirements>
  <command>
    <![CDATA[
        python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header $is_tsv
    ]]>
  </command>
  <inputs>
    <param name="input" type="data" format="csv" label="Point CSV file"/>
    <param name="org_file" type="data" format="tiff" label="Original label image file"/>
    <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> 
    <param name="is_tsv" optional="true" type="boolean" checked="false" truevalue="--is_tsv True" falsevalue="" help="tab separated input file"/>
  </inputs>
  <outputs>
    <data name="output" format="tiff"/>
  </outputs>
  <tests>
    <test>
      <param name="input" value="points.csv"/>
      <param name="org_file" value="galaxyIcon_noText.tif"/>
      <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/><!--to allow a change in e.g. date-->
    </test>
  </tests>
    <help> This tool converts points to a label image. </help>
  <citations>
    <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
  </citations>
</tool>