Mercurial > repos > thomaswollmann > color_deconvolution

comparison color_deconvolution.py @ 5:b1a42e192603 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 2fb27eb5a3e94840e5e357e2ace6f220e2f2a0aa
author thomaswollmann
date Wed, 01 Mar 2017 11:27:59 -0500
parents 3b2341714506
children
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4:a35141611262 5:b1a42e192603
82 res[res>1]=1 82 res[res>1]=1
83 83
84 with warnings.catch_warnings(): 84 with warnings.catch_warnings():
85 warnings.simplefilter("ignore") 85 warnings.simplefilter("ignore")
86 res = skimage.util.img_as_uint(res) #Attention: precision loss 86 res = skimage.util.img_as_uint(res) #Attention: precision loss
87 skimage.io.imsave(args.out_file.name, res, plugin='tifffile') 87 skimage.io.imsave(args.out_file.name, res, plugin='tifffile')