Mercurial > repos > thomaswollmann > binaryimage2points

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
author thomaswollmann
date Wed, 12 Dec 2018 04:49:24 -0500
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c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
thomaswollmann
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1 <tool id="binaryimage2points" name="Binary To Points" version="0.1">
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
thomaswollmann
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2 <description>Converts Binary Image to Points</description>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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3 <requirements>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
thomaswollmann
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4 <requirement type="package" version="1.15.4">numpy</requirement><!--https://github.com/numpy/numpy/pull/432 -->
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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5 <requirement type="package" version="0.14.0" >scikit-image</requirement>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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6 <requirement type="package" version="0.23.4" >pandas</requirement>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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7 </requirements>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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8 <command>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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9 <![CDATA[
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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10 python '$__tool_directory__/binaryimage2points.py' '$input' '$output'
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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11 ]]>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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12 </command>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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13 <inputs>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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14 <param name="input" type="data" format="tiff" label="Binary Image File"/>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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15 </inputs>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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16 <outputs>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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17 <data format="csv" name="output"/>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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18 </outputs>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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19 <tests>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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20 <test>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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21 <param name="input" value="galaxyIcon_noText.tif" />
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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22 <output name="output" value="points.csv" ftype="csv" />
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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23 </test>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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24 </tests>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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25 <help>This tool converts an image to points.</help>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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26 <citations>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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27 <citation type="doi">10.7717/peerj.453</citation>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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28 </citations>
c983b2d2cdd7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0
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29 </tool>