Mercurial > repos > thanhlv > snippy
diff snippy-core.xml @ 6:d9c204f7042c draft
planemo upload commit 321f9fa14fb9c9ab56eec84bfcc2d0c0760bee4a
| author | thanhlv |
|---|---|
| date | Mon, 23 Sep 2019 18:34:01 -0400 |
| parents | e10e0c41a6f3 |
| children |
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--- a/snippy-core.xml Mon Sep 09 09:41:12 2019 -0400 +++ b/snippy-core.xml Mon Sep 23 18:34:01 2019 -0400 @@ -14,10 +14,10 @@ ln -sf '$reference_source.ref_file.fields.path' 'ref' && #end if #for $indir in $indirs - #set $sample_name = os.path.splitext(os.path.basename(str($indir.name)))[0] + #set $sample_name = os.path.splitext(os.path.basename(str($indir.element_identifier)))[0] mkdir '$sample_name' && tar -xf '$indir' -C '$sample_name' --strip-components=1 && #end for - #set snippy_dirs = " ".join(["'{0}'".format(os.path.splitext(os.path.basename(str($indir.name)))[0]) for $indir in $indirs]) + #set snippy_dirs = " ".join(["'{0}'".format(os.path.splitext(os.path.basename(str($indir.element_identifier)))[0]) for $indir in $indirs]) snippy-core --ref 'ref' ${snippy_dirs}