comparison nullarbor.xml @ 2:4c3fb37e628d draft

planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/nullarbor commit 5215b942916d8c1186656f098cfdf4db52b5854b-dirty

1:c9e2a0019616

        <param name="roary_opt" argument="--roary_opt" type="text" value="" label="Roary options" help="Options to pass to roary eg. '-iv 1.75 -s -cd 97'" /> 
        <param name="mask" argument="--mask" type="text" value="AUTO" label="Mask regions (BED)" help="Mask core SNPS in these regions or 'auto'" /> 
        </section>

        <section name="plugins" title="Plugins">
        <param name="treebuilder" argument="--assembler" type="select" label="Assembler to use" help="Which assembler would you like shovill to use, default is skesa">
            <option value="skesa" selected="True">skesa</option>
            <option value="skesa_fast">skesa fast</option>
            <option value="megahit">megahit</option>
            <option value="shovill">shovill</option>
            <option value="spades">Spades</option>

2:4c3fb37e628d

        <param name="roary_opt" argument="--roary_opt" type="text" value="" label="Roary options" help="Options to pass to roary eg. '-iv 1.75 -s -cd 97'" /> 
        <param name="mask" argument="--mask" type="text" value="AUTO" label="Mask regions (BED)" help="Mask core SNPS in these regions or 'auto'" /> 
        </section>

        <section name="plugins" title="Plugins">
        <param name="assembler" argument="--assembler" type="select" label="Assembler to use" help="Which assembler would you like shovill to use, default is skesa">
            <option value="skesa" selected="True">skesa</option>
            <option value="skesa_fast">skesa fast</option>
            <option value="megahit">megahit</option>
            <option value="shovill">shovill</option>
            <option value="spades">Spades</option>