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comparison flye.xml @ 1:5e8958350b97 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit 0b1a602e21fbf8cfeba1294b6b985f1fba75afe9-dirty
author thanhlv
date Thu, 04 Apr 2019 11:45:42 -0400
parents 2bdeb8d42117
children e57e2c2952ff
comparison
equal deleted inserted replaced
0:2bdeb8d42117 1:5e8958350b97
33 -t \${GALAXY_SLOTS:-4} 33 -t \${GALAXY_SLOTS:-4}
34 -i $i 34 -i $i
35 #if $m: 35 #if $m:
36 -m '$m' 36 -m '$m'
37 #end if 37 #end if
38 #if $asm-coverage: 38 #if $asm_coverage:
39 --asm-coverage '$asm-coverage' 39 --asm-coverage '$asm_coverage'
40 #end if 40 #end if
41 #if $plasmid: 41 #if $plasmid:
42 '$plasmid' 42 '$plasmid'
43 #end if 43 #end if
44 #if $meta: 44 #if $meta:
61 <param argument="-g" type="text" label="estimated genome size (for example, 5m or 2.6g)"> 61 <param argument="-g" type="text" label="estimated genome size (for example, 5m or 2.6g)">
62 <validator type="regex" message="Genome size must be a float or integer, optionally followed by the a unit prefix (kmg)">^([0-9]*[.])?[0-9]+[kmg]?$</validator> 62 <validator type="regex" message="Genome size must be a float or integer, optionally followed by the a unit prefix (kmg)">^([0-9]*[.])?[0-9]+[kmg]?$</validator>
63 </param> 63 </param>
64 <param argument="-i" type="integer" value="1" label="number of polishing iterations" /> 64 <param argument="-i" type="integer" value="1" label="number of polishing iterations" />
65 <param argument="-m" type="integer" optional="true" label="minimum overlap between reads (default: auto)" /> 65 <param argument="-m" type="integer" optional="true" label="minimum overlap between reads (default: auto)" />
66 <param argument="--asm-coverage" type="integer" optional="true" label="reduced coverage for initial contig assembly (default: not set)" /> 66 <param argument="--asm_coverage" type="integer" optional="true" label="reduced coverage for initial contig assembly (default: not set)" />
67 <param argument="--plasmid" type="boolean" truevalue="--plasmid" falsevalue="" checked="False" label="rescue short unassmebled plasmids" /> 67 <param argument="--plasmid" type="boolean" truevalue="--plasmid" falsevalue="" checked="False" label="rescue short unassmebled plasmids" />
68 <param argument="--meta" type="boolean" truevalue="--meta" falsevalue="" checked="False" label="metagenome / uneven coverage mode" /> 68 <param argument="--meta" type="boolean" truevalue="--meta" falsevalue="" checked="False" label="metagenome / uneven coverage mode" />
69 <param argument="--no-trestle" type="boolean" truevalue="--no-trestle" falsevalue="" checked="False" label="skip Trestle stage" /> 69 <param argument="--no-trestle" type="boolean" truevalue="--no-trestle" falsevalue="" checked="False" label="skip Trestle stage" />
70 </inputs> 70 </inputs>
71 <outputs> 71 <outputs>