# HG changeset patch
# User thanhlv
# Date 1601639016 0
# Node ID 218301fbbb99d0618013a92494cd05150a5b9af1
# Parent  fb4da292b6d0275b35875268ed0e39be535bc96c
"planemo upload for repository https://github.com/thanhleviet/galaxy-tools commit 3a0b92d1a2dcd5c5b75e5b63727850139af21ace-dirty"

diff -r fb4da292b6d0 -r 218301fbbb99 data_manager/ariba_database_builder.py
--- a/data_manager/ariba_database_builder.py	Sun May 19 09:09:24 2019 -0400
+++ b/data_manager/ariba_database_builder.py	Fri Oct 02 11:43:36 2020 +0000
@@ -7,7 +7,7 @@
 import os
 import shutil
 import errno
-
+from pprint import pprint
 
 data_table_name = "ariba_databases"
 
@@ -158,6 +158,7 @@
 
 genes_dict = {
     "card" : "CARD",
+    "ncbi" : "ncbi",
     "resfinder" : "Resfinder",
     "plasmidfinder" : "Plasmidfinder",
     "megares" : "Megares",
@@ -212,7 +213,7 @@
         name = args.db_name
 
     params = json.loads(open(args.params).read())
-        
+    pprint(params)    
     target_directory = params['output_data'][0]['extra_files_path']
     
     if not os.path.isdir(target_directory):
diff -r fb4da292b6d0 -r 218301fbbb99 data_manager/ariba_database_builder.xml
--- a/data_manager/ariba_database_builder.xml	Sun May 19 09:09:24 2019 -0400
+++ b/data_manager/ariba_database_builder.xml	Fri Oct 02 11:43:36 2020 +0000
@@ -25,6 +25,7 @@
         <when value="curated">
             <param name="db" type="select" multiple="false" label="Select partial library to download">
                 <option value="card">CARD</option>
+                <option value="ncbi">ncbi</option>
                 <option value="resfinder">Resfinder</option>
                 <option value="plasmidfinder">Plasmidfinder</option>
                 <option value="megares">Megares</option>
diff -r fb4da292b6d0 -r 218301fbbb99 data_manager/macros.xml
--- a/data_manager/macros.xml	Sun May 19 09:09:24 2019 -0400
+++ b/data_manager/macros.xml	Fri Oct 02 11:43:36 2020 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION@">2.13.2</token>
+    <token name="@VERSION@">2.14.6</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">ariba</requirement>
diff -r fb4da292b6d0 -r 218301fbbb99 data_manager_conf.xml
--- a/data_manager_conf.xml	Sun May 19 09:09:24 2019 -0400
+++ b/data_manager_conf.xml	Fri Oct 02 11:43:36 2020 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager/ariba_database_builder.xml" id="ariba_database_builder" version="0.1.0">
+    <data_manager tool_file="data_manager/ariba_database_builder.xml" id="ariba_database_builder" version="2.14.6">
         <data_table name="ariba_databases">
             <output>
                 <column name="value" />