comparison data_manager/ariba_database_builder.py @ 3:b13f7ba85697 draft

Update ariba_database_builder.py

2:204f94dc1c2c

    params = json.loads(open(args.output).read())
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    data_manager_entry = []
    for db in db_folder:
        # print("Current: ".format(os.path.join(output_path, d)))
        # print("Target: {}".format(target_directory))
        shutil.move(os.path.join(output_path, d), os.path.join(target_directory, d))
        data_manager_entry.append(dict(value=db.lower(),
                                  name=db,
                                  path=target_directory)
                                    )

3:b13f7ba85697

    params = json.loads(open(args.output).read())
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    data_manager_entry = []
    for db in db_folder:
        print("Current: ".format(os.path.join(output_path, d)))
        print("Target: {}".format(target_directory))
        shutil.move(os.path.join(output_path, d), os.path.join(target_directory, d))
        data_manager_entry.append(dict(value=db.lower(),
                                  name=db,
                                  path=target_directory)
                                    )