Mercurial > repos > thanhlv > coverm
view coverm.xml @ 1:26c496578cc6 draft
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/coverm commit 96d70addd3efb4810b5ea82b957eba42a91a29aa
author | thanhlv |
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date | Wed, 09 Oct 2019 04:09:28 -0400 |
parents | ef0187f2d1f6 |
children | 76061f7c682c |
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<tool id="coverm" name="coverm" version="@VERSION@"> <description>Read coverage calculator for metagenomics</description> <macros> <token name="@VERSION@">0.2.0.alpha7</token> </macros> <requirements> <requirement type="package" version="@VERSION@">coverm</requirement> </requirements> <version_command>coverm --version</version_command> <command detect_errors="exit_code"><![CDATA[ coverm contig -t \${GALAXY_SLOTS} --methods metabat --bam-files $bam > depth.tsv ]]></command> <inputs> <param name="bam" type="data" format="bam" label="Input bam file" /> </inputs> <outputs> <data name="depth" format="json" label="${tool.name} on ${on_string} Depth" from_work_dir="depth.tsv"/> </outputs> <tests> <test> </test> </tests> <help><![CDATA[ Documentation can be found at `<https://github.com/wwood/CoverM>`_. ]]></help> </tool>