Mercurial > repos > thanhlv > biotradis
view biotradis_add_tags.xml @ 0:f47f5ba2c9be draft
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 3ea7f0b0c83b2e404a61d5c50545fe4b3bd2d6c6-dirty
author | thanhlv |
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date | Wed, 27 Feb 2019 10:54:09 -0500 |
parents | |
children | 9b1daaba9e8d |
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<tool id="add_tradis_tags" name="add tradis tags" version="@VERSION@"> <description>Generates a BAM file with tags added to read strings.</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ add_tradis_tags -b $input_bam -o added -v > $log ]]></command> <inputs> <param name="input_bam" type="data" format="bam" label="BAM file" help="" /> </inputs> <outputs> <data name="log" format="txt" label="${tool.name} on ${on_string} Log" /> <data name="output_bam" format="bam" label="${tool.name} on ${on_string}" from_work_dir="added.tr.bam" /> </outputs> <tests> </tests> <help><![CDATA[ Adds transposon sequence and quality tags to the read strings and outputs a BAM. Usage: add_tags -b file.bam [options] Options: -b : bam file with tradis tags -v : verbose debugging output ]]></help> </tool>