Mercurial > repos > thanhlv > biotradis

comparison biotradis_bacteria_tradis.xml @ 1:ec65ac0a1fea draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
author thanhlv
date Thu, 25 Jul 2019 04:48:26 -0400
parents f47f5ba2c9be
children 13e118dd857a
comparison
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0:f47f5ba2c9be 1:ec65ac0a1fea
13 #for $input_file in $input_files 13 #for $input_file in $input_files
14 ## Add single quotes around each input file identifier 14 ## Add single quotes around each input file identifier
15 #set $_input_file = "'{}'".format($input_file.element_identifier) 15 #set $_input_file = "'{}'".format($input_file.element_identifier)
16 ln -s '${input_file}' ${_input_file} && 16 ln -s '${input_file}' ${_input_file} &&
17 echo ${_input_file} >> fq.list && 17 echo ${_input_file} >> fq.list &&
18 #end for 18 #end for
19 19
20 bacteria_tradis -f fq.list 20 bacteria_tradis -f fq.list
21 -t $tag 21 -t $tag
22 -r $ref 22 -r $ref
23 -td $tag_dir 23 -td $tag_dir