diff cluster.xml @ 26:dd1bc5779f5c draft

planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit a5926dec65ac1474e7b79685df5b9330601ef167-dirty

--- a/cluster.xml	Tue Oct 22 10:54:47 2019 -0400
+++ b/cluster.xml	Tue Oct 22 11:00:47 2019 -0400
@@ -10,7 +10,7 @@
             gzip < $contact_map > contact_map.p.gz &&
         #else:
             ln -s $contact_map contact_map.p.gz &&
-        
+       
         bin3C cluster
         --max-image $max_image
         --min-extent $min_extent
@@ -55,7 +55,9 @@
         <data name="clustering_csv" format="tabular" label="{tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/>
         <data name="cm_graph_edges" format="binary" label="{tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/>
         <data name="cm_graph_tree" format="text" label="{tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/>
-        <data name="fasta" format="fasta" label="{tool.name} on ${on_string} Per-cluster multi-fasta sequences" from_work_dir="out/infomap.log"/>
+        <collection type="list" name="fasta" label="${tool.name} on ${on_string} Per-cluster multi-fasta sequences">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.fna" directory="out/fasta" ext="fna" visible="false" />
+        </collection>
     </outputs>
 
     <help><![CDATA[