Mercurial > repos > thanhlv > bin3c

diff mkmap.xml @ 4:a8ebe008f31a draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 70fbc98b2ff2be134400e4dc0df1ed60458d0604
author thanhlv
date Thu, 03 Oct 2019 06:33:55 -0400
parents a8600e2b39b2
children 0c844be874b5
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--- a/mkmap.xml	Thu Oct 03 05:40:30 2019 -0400
+++ b/mkmap.xml	Thu Oct 03 06:33:55 2019 -0400
@@ -17,8 +17,9 @@
         --min-insert $min_insert
         --min-mapq $min_mapq
         --strong $strong
-        #if neb_name != ""
-            --enzyme $neb_name
+        #if $neb_name != ""
+            #set $_neb_name = ' -e '.join( str( $neb_name ).split( ';' ) )
+            -e ${_neb_name}
         #end if
         $ref $bam out
     ]]></command>
@@ -37,7 +38,7 @@
         <param name="min_mapq" type="integer" min="0" value="60" label="Minimum acceptable mapping quality" />
         <param name="strong" type="integer" min="1" value="10" label="Accepted alignments must being N matches" />
         <param name="neb_name" type="text" value="" label="Case-sensitive NEB enzyme name. Use multiple times for
-                        multiple enzymes" />
+                        multiple enzymes", help="Use ; to separate multiple enzymes, e.g enzyme1;enzyme2" />
     </inputs>
 
     <outputs>