Mercurial > repos > thanhlv > bin3c

diff cluster.xml @ 23:68218ea2b0aa draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit a5926dec65ac1474e7b79685df5b9330601ef167-dirty
author thanhlv
date Tue, 22 Oct 2019 09:53:59 -0400
parents efaccfc1eb30
children 9da36e77ec34
line wrap: on
line diff
--- a/cluster.xml	Tue Oct 22 09:46:29 2019 -0400
+++ b/cluster.xml	Tue Oct 22 09:53:59 2019 -0400
@@ -6,6 +6,7 @@
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="exit_code"><![CDATA[
+        ln -s $contact_map map.p.gz &&
         bin3C cluster
         --max-image $max_image
         --min-extent $min_extent
@@ -18,7 +19,7 @@
         $no_fasta
         $only_large
         --n-iter $iteration
-        $contact_map out
+        map.p.gz out
     ]]>    </command>
 
     <inputs>