Mercurial > repos > thanhlv > bin3c

comparison cluster.xml @ 24:9da36e77ec34 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit a5926dec65ac1474e7b79685df5b9330601ef167-dirty
author thanhlv
date Tue, 22 Oct 2019 10:00:13 -0400
parents 68218ea2b0aa
children b9e12e746f6d
comparison
equal deleted inserted replaced
23:68218ea2b0aa 24:9da36e77ec34
40 <param name="only_large" type="boolean" truevalue="--only-large" falsevalue="" checked="false" label="Only write FASTA for clusters longer than min_extent" /> 40 <param name="only_large" type="boolean" truevalue="--only-large" falsevalue="" checked="false" label="Only write FASTA for clusters longer than min_extent" />
41 <!-- <param name="fasta" type="data" format="fasta,fastq.gz" optional="true" label="Alternative source FASTA from that supplied during mkmap" /> --> 41 <!-- <param name="fasta" type="data" format="fasta,fastq.gz" optional="true" label="Alternative source FASTA from that supplied during mkmap" /> -->
42 </inputs> 42 </inputs>
43 43
44 <outputs> 44 <outputs>
45 <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/> 45 <data name="log" format="text" label="${tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
46 <data name="clustering_mcl" format="binary" label="{tool.name} on ${on_string} Clustering solution in MCL format" from_work_dir="out/clustering.mcl"/> 46 <data name="clustering_mcl" format="binary" label="${tool.name} on ${on_string} Clustering solution in MCL format" from_work_dir="out/clustering.mcl"/>
47 <data name="clustering_p_gz" format="binary" label="{tool.name} on ${on_string} Clustering solution as a picked python dictionary" from_work_dir="out/clustering.p.gz"/> 47 <data name="clustering_p_gz" format="binary" label="${tool.name} on ${on_string} Clustering solution as a picked python dictionary" from_work_dir="out/clustering.p.gz"/>
48 <data name="clustering_plot" format="png" label="{tool.name} on ${on_string} Heatmap of the contact map after clustering" from_work_dir="out/cluster_plot.png"/> 48 <data name="clustering_plot" format="png" label="${tool.name} on ${on_string} Heatmap of the contact map after clustering" from_work_dir="out/cluster_plot.png"/>
49 <data name="clustering_csv" format="tabular" label="{tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/> 49 <data name="clustering_csv" format="tabular" label="${tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/>
50 <data name="cm_graph_edges" format="binary" label="{tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/> 50 <data name="cm_graph_edges" format="binary" label="${tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/>
51 <data name="cm_graph_tree" format="text" label="{tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/> 51 <data name="cm_graph_tree" format="text" label="${tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/>
52 <data name="fasta" format="fasta" label="{tool.name} on ${on_string} Per-cluster multi-fasta sequences" from_work_dir="out/infomap.log"/> 52 <data name="fasta" format="fasta" label="${tool.name} on ${on_string} Per-cluster multi-fasta sequences" from_work_dir="out/infomap.log"/>
53 </outputs> 53 </outputs>
54 54
55 <help><![CDATA[ 55 <help><![CDATA[
56 56
57 Documentation can be found at `<https://github.com/cerebis/bin3C>`_. 57 Documentation can be found at `<https://github.com/cerebis/bin3C>`_.