Mercurial > repos > thanhlv > bin3c

comparison mkmap.xml @ 5:0c844be874b5 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 70fbc98b2ff2be134400e4dc0df1ed60458d0604-dirty
author thanhlv
date Thu, 03 Oct 2019 07:04:32 -0400
parents a8ebe008f31a
children d9712694b063
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4:a8ebe008f31a 5:0c844be874b5
36 <param name="bin_size" type="integer" min="0" value="0" label="Size of bins for windows extent maps" /> 36 <param name="bin_size" type="integer" min="0" value="0" label="Size of bins for windows extent maps" />
37 <param name="min_insert" type="integer" min="0" value="0" label="Minimum pair separation" /> 37 <param name="min_insert" type="integer" min="0" value="0" label="Minimum pair separation" />
38 <param name="min_mapq" type="integer" min="0" value="60" label="Minimum acceptable mapping quality" /> 38 <param name="min_mapq" type="integer" min="0" value="60" label="Minimum acceptable mapping quality" />
39 <param name="strong" type="integer" min="1" value="10" label="Accepted alignments must being N matches" /> 39 <param name="strong" type="integer" min="1" value="10" label="Accepted alignments must being N matches" />
40 <param name="neb_name" type="text" value="" label="Case-sensitive NEB enzyme name. Use multiple times for 40 <param name="neb_name" type="text" value="" label="Case-sensitive NEB enzyme name. Use multiple times for
41 multiple enzymes", help="Use ; to separate multiple enzymes, e.g enzyme1;enzyme2" /> 41 multiple enzymes"/>
42 <help><![CDATA[Use ; to separate multiple enzymes e.g enzyme1;enzyme2"]]> </help>
42 </inputs> 43 </inputs>
43 44
44 <outputs> 45 <outputs>
45 <data name="contact_map" format="tar.gz" label="{tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/> 46 <data name="contact_map" format="tar.gz" label="{tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
46 <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/> 47 <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>