Mercurial > repos > thanhlv > bin3c

comparison cluster.xml @ 27:0ab55bb24e71 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit a5926dec65ac1474e7b79685df5b9330601ef167-dirty
author thanhlv
date Tue, 22 Oct 2019 11:06:51 -0400
parents dd1bc5779f5c
children 175b45d4f6fd
comparison
equal deleted inserted replaced
26:dd1bc5779f5c 27:0ab55bb24e71
46 <param name="only_large" type="boolean" truevalue="--only-large" falsevalue="" checked="false" label="Only write FASTA for clusters longer than min_extent" /> 46 <param name="only_large" type="boolean" truevalue="--only-large" falsevalue="" checked="false" label="Only write FASTA for clusters longer than min_extent" />
47 <param name="compress" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Compress contact map before run" help="Only choose when the contact map was not generated by mkmap on Galaxy" /> 47 <param name="compress" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Compress contact map before run" help="Only choose when the contact map was not generated by mkmap on Galaxy" />
48 </inputs> 48 </inputs>
49 49
50 <outputs> 50 <outputs>
51 <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/> 51 <data name="log" format="text" label="${tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
52 <data name="clustering_mcl" format="binary" label="{tool.name} on ${on_string} Clustering solution in MCL format" from_work_dir="out/clustering.mcl"/> 52 <data name="clustering_mcl" format="binary" label="${tool.name} on ${on_string} Clustering solution in MCL format" from_work_dir="out/clustering.mcl"/>
53 <data name="clustering_p_gz" format="binary" label="{tool.name} on ${on_string} Clustering solution as a picked python dictionary" from_work_dir="out/clustering.p.gz"/> 53 <data name="clustering_p_gz" format="binary" label="${tool.name} on ${on_string} Clustering solution as a picked python dictionary" from_work_dir="out/clustering.p.gz"/>
54 <data name="clustering_plot" format="png" label="{tool.name} on ${on_string} Heatmap of the contact map after clustering" from_work_dir="out/cluster_plot.png"/> 54 <data name="clustering_plot" format="png" label="${tool.name} on ${on_string} Heatmap of the contact map after clustering" from_work_dir="out/cluster_plot.png"/>
55 <data name="clustering_csv" format="tabular" label="{tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/> 55 <data name="clustering_csv" format="tabular" label="${tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/>
56 <data name="cm_graph_edges" format="binary" label="{tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/> 56 <data name="cm_graph_edges" format="binary" label="${tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/>
57 <data name="cm_graph_tree" format="text" label="{tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/> 57 <data name="cm_graph_tree" format="text" label="${tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/>
58 <collection type="list" name="fasta" label="${tool.name} on ${on_string} Per-cluster multi-fasta sequences"> 58 <collection type="list" name="fasta" label="${tool.name} on ${on_string} Per-cluster multi-fasta sequences">
59 <discover_datasets pattern="(?P&lt;designation&gt;.*)\.fna" directory="out/fasta" ext="fna" visible="false" /> 59 <discover_datasets pattern="(?P&lt;designation&gt;.*)\.fna" directory="out/fasta" ext="fna" visible="false" />
60 </collection> 60 </collection>
61 </outputs> 61 </outputs>
62 62