Mercurial > repos > thanhlv > bbmap

diff sendsketch.xml @ 1:f285fe3f81ff draft

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"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bbmap commit fec9224232f4fe1200df4f66e1fa064533b3f21e-dirty"
author thanhlv
date Mon, 25 Nov 2019 12:39:12 +0000
parents 23ecfa3e5eff
children 68bea7cc680c
line wrap: on
line diff
--- a/sendsketch.xml	Mon Nov 25 11:28:06 2019 +0000
+++ b/sendsketch.xml	Mon Nov 25 12:39:12 2019 +0000
@@ -7,7 +7,9 @@
     <expand macro="version_command" />
 
     <command detect_errors="exit_code"><![CDATA[
-        ln -sf '$input' '$input.element_identifier' &&
+        #import re
+        #set $safename = re.sub('[^\w\-_\.]', '_', $input.element_identifier)
+        ln -sf '$input' '$safename' &&
         sendsketch.sh
         #if $printall
             printall=t