Mercurial > repos > thanhlv > bbmap
comparison filter_by_name.xml @ 5:5127e62d11fb draft default tip
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bbmap commit f832310ee25935e283f72f057790af7fad0d661b-dirty"
| author | thanhlv |
|---|---|
| date | Wed, 18 Mar 2020 21:24:20 +0000 |
| parents | e40d2adb0896 |
| children |
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| 4:e40d2adb0896 | 5:5127e62d11fb |
|---|---|
| 60 names=$source.in_string | 60 names=$source.in_string |
| 61 #elif $source.type == "name": | 61 #elif $source.type == "name": |
| 62 names=$source.name_list | 62 names=$source.name_list |
| 63 #end if | 63 #end if |
| 64 include=$include | 64 include=$include |
| 65 #if $q33 | |
| 66 qin=33 | |
| 67 #end if | |
| 65 2>&1 | tee > log.txt | 68 2>&1 | tee > log.txt |
| 66 ]]> </command> | 69 ]]> </command> |
| 67 <inputs> | 70 <inputs> |
| 68 <conditional name="singlePaired"> | 71 <conditional name="singlePaired"> |
| 69 <param name="sPaired" type="select" label="Is the input paired- or single-end?"> | 72 <param name="sPaired" type="select" label="Is the input paired- or single-end?"> |
| 92 </when> | 95 </when> |
| 93 <when value="name"> | 96 <when value="name"> |
| 94 <param name="name_list" type="data" format="txt" label="Input ID list"/> | 97 <param name="name_list" type="data" format="txt" label="Input ID list"/> |
| 95 </when> | 98 </when> |
| 96 </conditional> | 99 </conditional> |
| 100 <param name="q33" type="boolean" truevalue="true" falsevalue="" checked="false" label="Q33?" /> | |
| 97 <param name="include" type="boolean" truevalue="t" falsevalue="f" checked="true" label="Include the filtered names" /> | 101 <param name="include" type="boolean" truevalue="t" falsevalue="f" checked="true" label="Include the filtered names" /> |
| 98 </inputs> | 102 </inputs> |
| 99 <outputs> | 103 <outputs> |
| 100 <data name="log" from_work_dir="log.txt" format="txt" label="${tool.name} on ${on_string}: Log" /> | 104 <data name="log" from_work_dir="log.txt" format="txt" label="${tool.name} on ${on_string}: Log" /> |
| 101 <data format_source="input_singles" name="filtered_reads_single" from_work_dir="f_read.fq" label="${tool.name} on ${on_string}: filtered reads"> | 105 <data format_source="input_singles" name="filtered_reads_single" from_work_dir="f_read.fq" label="${tool.name} on ${on_string}: filtered reads"> |