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view ariba_flag.xml @ 12:9944044da8a2 draft

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"planemo upload for repository https://github.com/sanger-pathogens/ariba commit 3a0b92d1a2dcd5c5b75e5b63727850139af21ace-dirty"
author thanhlv
date Fri, 02 Oct 2020 12:00:48 +0000
parents 79b55c74fb80
children
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<tool id="ariba_flag" name="ARIBA flag" version="@VERSION@">
    <description>
        Translate the meaning of a flag
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <command detect_errors="exit_code"><![CDATA[
        ariba flag $flag > flag_explain.txt
    ]]>    </command>

    <inputs>
        <param name="flag" type="integer" value="" label="A number" help="Flag to be translated"/>
    </inputs>

    <outputs>
        <data name="flag_explain" format="txt" label="${tool.name} result for code: ${flag}" from_work_dir="flag_explain.txt"/>
    </outputs>

    <help><![CDATA[
    usage: ariba flag <flag>

    Translate the meaning of a flag output by ARIBA, found in the report tsv file

    ]]>    </help>
    <expand macro="citations"/>
</tool>