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comparison kmersvm/nullseq.xml @ 3:5b3d8ca0bf20 draft

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Uploaded updated README
author test-svm
date Sun, 05 Aug 2012 16:47:06 -0400
parents 66088269713e
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2:e8dcc2ed0f9f 3:5b3d8ca0bf20
26 </param> 26 </param>
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data format="interval" name="nullseq_output" from_work_dir="nullseq_output.bed" /> 29 <data format="interval" name="nullseq_output" from_work_dir="nullseq_output.bed" />
30 </outputs> 30 </outputs>
31 <tests>
32 <test>
33 <param name="input" value="nullseq_test.bed" ftype="bed" />
34 <param name="fold" value="1" />
35 <param name="gc_err" value="0.02" />
36 <param name="rpt_err" value="0'02" />
37 <param name="rseed" value="1" />
38 <param name="indices_path" value="hg19" />
39 <output name="output" file="nullseq_output.bed" />
40 </test>
41 </tests>
42 <help> 31 <help>
43 32
44 **What it does** 33 **What it does**
45 34
46 Takes an input BED file and generates a set of sequences for use as negative data (null sequences) in Train SVM similar in length, GC content and repeat fraction. Uses random sampling for efficiency. 35 Takes an input BED file and generates a set of sequences for use as negative data (null sequences) in Train SVM similar in length, GC content and repeat fraction. Uses random sampling for efficiency.