diff seq_form_db.xml @ 2:3bb9bbecae97 draft default tip

planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 767392e3136912fa30d1e0786eba789dd77d722c-dirty

--- a/seq_form_db.xml	Tue Jul 29 12:01:32 2025 +0000
+++ b/seq_form_db.xml	Wed Sep 03 14:07:14 2025 +0000
@@ -1,8 +1,8 @@
 <tool id="seq_form_db" name="Get sequences Data From DB" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
     <description>Import fragment's data from an accessible DB and export it as .gb files</description>
     <macros>
-        <token name="@VERSION_SUFFIX@">2</token>
-        <token name="@TOOL_VERSION@">0.3.0</token>
+        <token name="@VERSION_SUFFIX@">3</token>
+        <token name="@TOOL_VERSION@">0.3.1</token>
     </macros>
     <requirements>
         <requirement type="package" version="2.2.3">pandas</requirement>
@@ -47,7 +47,7 @@
         <collection name="output_gb" type="list" label="GenBank Files collection" >
             <discover_datasets pattern="(?P&lt;name&gt;.*).gb" format="genbank" directory="outdir" />
         </collection>
-        <data name='report' format='txt' label='text report' />
+        <data name='report' format='txt' label='missing fragments' />
     </outputs>
     <tests>
     <!--manual parameters-->
@@ -125,8 +125,7 @@
             </output_collection>
             <output name='report'>
                 <assert_contents>
-                    <has_n_lines n="1" />
-                    <has_line_matching expression="NO missing fragments in DB" />
+                    <has_n_lines n="0" />
                 </assert_contents>
             </output>
         </test>
@@ -201,8 +200,7 @@
             </output_collection>
             <output name='report'>
                 <assert_contents>
-                    <has_n_lines n="1" />
-                    <has_line_matching expression="NO missing fragments in DB" />
+                    <has_n_lines n="0" />
                 </assert_contents>
             </output>
         </test>
@@ -281,8 +279,7 @@
             </output_collection>
             <output name='report'>
                 <assert_contents>
-                    <has_n_lines n="7" />
-                    <has_line_matching expression="Missing fragment in DB:" />
+                    <has_n_lines n="6" />
                     <has_line_matching expression="ACP10001AaCbbBS" />
                     <has_line_matching expression="NEW20001BbDccKT" />
                     <has_line_matching expression="XYZ10003AaCbbBS" />