diff save_to_db.py @ 5:f934215bdb78 draft default tip

planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae

--- a/save_to_db.py	Mon Jun 02 09:48:14 2025 +0000
+++ b/save_to_db.py	Mon Jun 02 10:29:28 2025 +0000
@@ -123,8 +123,9 @@
             for gb_file in gb_files:
                 # Extract base file name (just the file name, not the full path)
                 real_file_name = os.path.basename(gb_file)
+                fragment_name = file_name_mapping_dict.get(real_file_name)
 
-                print(f"Processing file: {real_file_name}")  # Debugging: Log the current file
+                print(f"Processing file: {real_file_name}({fragment_name})")  # Debugging: Log the current file
 
                 # Get the corresponding fragment name from the mapping
                 fragment_name = file_name_mapping_dict.get(real_file_name)
@@ -196,6 +197,9 @@
     if args.json_conf != 'None' or '':
         with open(args.json_conf, "r") as f:
             json_config = json.load(f)
+        if "execution" in json_config and json_config["execution"] is False:
+            print("Execution was blocked by config (execution = false)")
+            return
 
     # Prefer user input; fallback to JSON_ values if not provided
     user_params = {