diff data_manager/cache_fetcher.py @ 0:e0b92d203870 draft

"planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/cache_fetcher.py	Mon Jul 04 13:28:30 2022 +0000
@@ -0,0 +1,53 @@
+from os import (
+    path as os_path,
+    mkdir as os_mkdir
+)
+
+from requests import get as r_get
+
+from tempfile import (
+    NamedTemporaryFile
+)
+
+import argparse
+
+def download(
+    url: str,
+    file: str = ""
+) -> str:
+    """
+    Download a file from 'url' and save it as 'file'.
+    Parameters:
+    url  -- URL the file is downloaded from
+    file -- (Optional) filename the downloaded file is saved into (default: "")
+    Returns:
+    A filename where the downloaded file has stored into
+    """
+    r = r_get(url)
+    if not file:
+        f = NamedTemporaryFile(
+            mode='wb',
+            delete=False
+        )
+        file = f.name
+    else:
+        f = open(file, 'wb')
+    f.write(r.content)
+    f.close()
+    return file
+
+parser = argparse.ArgumentParser(description="Download a cache file")
+parser.add_argument('-u','--url', required=True, default=None, type=str, help="URL the file is downloaded from")
+parser.add_argument('-o','--outfile', required=True, default=None, type=str, help="A filename where the downloaded file has stored into")
+
+args = parser.parse_args()
+
+url= args.url #"https://gitlab.com/breakthewall/rrCache-data/-/raw/master/"
+filename= os_path.basename(args.outfile) #"cid_strc.json.gz"
+cache_dir=os_path.dirname(args.outfile) #'${GALAXY_DATA_MANAGER_DATA_PATH}'+'/rpextractsink/cache/'
+full_filename=os_path.join(cache_dir,filename) #'${GALAXY_DATA_MANAGER_DATA_PATH}'+'/rpextractsink/cache/cid_strc.json.gz'
+
+if not os_path.isdir(cache_dir):
+    os_mkdir(cache_dir)
+
+download(url+filename, full_filename)
\ No newline at end of file