# HG changeset patch # User tduigou # Date 1754568987 0 # Node ID bb70a954048e74e1acab8c83498546d994dec032 # Parent 0b8f66f0383a60552e315737d209454cc7431c48 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit ed922f834f891e6048385803c3004465551c911d-dirty diff -r 0b8f66f0383a -r bb70a954048e create_assembly_picklists.xml --- a/create_assembly_picklists.xml Thu Aug 07 11:55:14 2025 +0000 +++ b/create_assembly_picklists.xml Thu Aug 07 12:16:27 2025 +0000 @@ -91,7 +91,7 @@ - + @@ -336,6 +336,15 @@ * **Backbone Molar Ratio**: between 0.0 and 1.0 This section is to multiplie the backbone concentration with the part:backbone molar ratio. This tricks the calculator into making a picklist with the desired ratio. For example, a part:backbone = 2:1 will multiply the backbone concentration by 2, therefore half as much of it will be added to the well. **If Part quantity unit is ng**: Backbone Molar Ratio calculation is not performed in this case. + +**Mode**: +--------- +This option allows you to choose the mode in which the tool will be executed: +* **Standard**: Runs the tool as a standalone application. +* **DEMO**: Runs the tool as a standalone application with default parameters adapted to the demo dataset: + - GenBank File(s): `Download... `_ NOTE: make files as collection list (`How to make collection `_) + - Assembly Plan (csv or excel): `Download... `_ + - Source Plate (excel): `Download... `_ ]]> diff -r 0b8f66f0383a -r bb70a954048e output.html --- a/output.html Thu Aug 07 11:55:14 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,291 +0,0 @@ - - - - - - - Test Results (powered by Planemo) - - - - - - - - - - -
-
-
-
- - - - - - - \ No newline at end of file diff -r 0b8f66f0383a -r bb70a954048e output.json --- a/output.json Thu Aug 07 11:55:14 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1287 +0,0 @@ -{ - "summary": { - "num_errors": 0, - "num_failures": 0, - "num_skips": 0, - "num_tests": 2 - }, - "tests": [ - { - "data": { - "inputs": { - "genbank_files": { - "id": "067da507497e9535", - "src": "hdca" - }, - "picklist": { - "id": "378a03a7f52f85cb", - "src": "hda" - }, - "setting|buffer_volume": "0.3", - "setting|dispenser": "labcyte_echo", - "setting|mode": "std", - "setting|part_quantity": "1.3", - "setting|quantity_unit": "fmol", - "setting|total_volume": "1.0", - "source_plate": { - "id": "56352d47c35661a0", - "src": "hda" - } - }, - "job": { - "command_line": "mkdir renamed_parts && touch 'picklist.zip' && touch 'source_plate.xlsx' && cp '/tmp/tmp0ydceoto/files/9/8/e/dataset_98e242c7-bb2d-4c6a-993f-60d0924e7b12.dat' 'renamed_parts/HC_Amp_ccdB.gb' && cp '/tmp/tmp0ydceoto/files/7/0/6/dataset_706c02af-8550-4889-b50b-e37fc930c2b1.dat' 'renamed_parts/conn a-c.gb' && cp '/tmp/tmp0ydceoto/files/5/9/0/dataset_5909bed2-47ee-425f-ab79-ab035b75853f.dat' 'renamed_parts/conn b-e.gb' && cp '/tmp/tmp0ydceoto/files/4/b/0/dataset_4b0aa290-5223-4524-8509-ada73918d8ec.dat' 'renamed_parts/conn b-l.gb' && cp '/tmp/tmp0ydceoto/files/3/8/7/dataset_3872b70b-b354-4fe6-8490-9c292c405b74.dat' 'renamed_parts/conn d-e.gb' && cp '/tmp/tmp0ydceoto/files/7/6/a/dataset_76aaccc0-8207-4976-915b-b7fc10386ac5.dat' 'renamed_parts/conn d-f.gb' && cp '/tmp/tmp0ydceoto/files/5/6/4/dataset_5644a108-e049-4fb7-8cb7-dece2f08b8b1.dat' 'renamed_parts/conn h-ha.gb' && cp '/tmp/tmp0ydceoto/files/0/d/b/dataset_0db7cef7-a21b-4ece-aad2-5f5a907af5f0.dat' 'renamed_parts/conn h-j.gb' && cp '/tmp/tmp0ydceoto/files/d/5/d/dataset_d5df7192-76d1-46dd-9f65-721f4f04c0ae.dat' 'renamed_parts/conn h-k.gb' && cp '/tmp/tmp0ydceoto/files/3/5/d/dataset_35da9184-3e25-4f54-bee6-e72f83102755.dat' 'renamed_parts/conn j-k.gb' && cp '/tmp/tmp0ydceoto/files/e/6/a/dataset_e6af64a1-def5-4d10-9cde-283077f60b4c.dat' 'renamed_parts/conn l-n.gb' && cp '/tmp/tmp0ydceoto/files/b/a/0/dataset_ba0adc81-3a29-496c-90d2-03a45d7db04d.dat' 'renamed_parts/conn l-r.gb' && cp '/tmp/tmp0ydceoto/files/1/f/e/dataset_1fee6f8e-9293-44ee-b723-16e4a1f82621.dat' 'renamed_parts/conn l-w.gb' && cp '/tmp/tmp0ydceoto/files/2/c/d/dataset_2cdc6a4d-c6df-4984-9f0e-d33eab2102ed.dat' 'renamed_parts/conn l-y.gb' && cp '/tmp/tmp0ydceoto/files/b/b/6/dataset_bb6e596f-8505-4540-bb5a-07e82e68e618.dat' 'renamed_parts/conn q-r.gb' && cp '/tmp/tmp0ydceoto/files/2/6/e/dataset_26e6438c-d8c4-4060-a3cb-64ce420d29aa.dat' 'renamed_parts/conn r-w.gb' && cp '/tmp/tmp0ydceoto/files/4/7/f/dataset_47f34ade-a2bf-47f7-81d5-f60422427f54.dat' 'renamed_parts/conn t-v.gb' && cp '/tmp/tmp0ydceoto/files/5/6/b/dataset_56b82ca7-f29c-41b6-8c9d-b0dd504ddd48.dat' 'renamed_parts/conn w-x.gb' && cp '/tmp/tmp0ydceoto/files/0/3/f/dataset_03feeb89-9a2d-47fd-afa5-26945035bf15.dat' 'renamed_parts/conn w-y.gb' && cp '/tmp/tmp0ydceoto/files/b/7/7/dataset_b77e96c7-12cb-451f-a14d-3fce6df601f3.dat' 'renamed_parts/conn w-z.gb' && cp '/tmp/tmp0ydceoto/files/9/5/c/dataset_95ce0fe6-8b94-493b-b323-9b270c4e8f18.dat' 'renamed_parts/conn y-z.gb' && cp '/tmp/tmp0ydceoto/files/9/7/b/dataset_97be599e-6b31-4110-9a0b-10383325b111.dat' 'renamed_parts/p10_tet-aptazyme.gb' && cp '/tmp/tmp0ydceoto/files/c/9/e/dataset_c9e7913a-6a39-4319-b971-9ed673c2ea39.dat' 'renamed_parts/p11_sv40polya.gb' && cp '/tmp/tmp0ydceoto/files/5/9/a/dataset_59adb3cf-407d-4599-9d9a-5f587cd25554.dat' 'renamed_parts/p14_cmvp.gb' && cp '/tmp/tmp0ydceoto/files/d/d/9/dataset_dd9d0e48-3556-447d-8249-10e99d87e282.dat' 'renamed_parts/p14_sv40p.gb' && cp '/tmp/tmp0ydceoto/files/b/5/c/dataset_b5c7a9d1-8f46-44a3-8e21-5f1c4588a561.dat' 'renamed_parts/p15_puror.gb' && cp '/tmp/tmp0ydceoto/files/f/2/7/dataset_f27a4a37-4b5b-41fb-9a3e-6ee628d65484.dat' 'renamed_parts/p16_bghpolya.gb' && cp '/tmp/tmp0ydceoto/files/1/1/5/dataset_11506f9a-efb5-40c2-a53b-4be66e599522.dat' 'renamed_parts/p18_cmvp.gb' && cp '/tmp/tmp0ydceoto/files/7/9/3/dataset_793e3968-9e5c-48e6-9028-4fc83aa2756c.dat' 'renamed_parts/p18_ef1ap.gb' && cp '/tmp/tmp0ydceoto/files/2/4/9/dataset_249c9893-8284-4e48-8c2e-221581bab86b.dat' 'renamed_parts/p19_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/6/7/0/dataset_6700067a-7c9d-4ff7-8468-05833c913411.dat' 'renamed_parts/p19_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/8/3/a/dataset_83a510c2-7eab-4453-9716-9220f302deea.dat' 'renamed_parts/p19_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/5/c/7/dataset_5c7c27c6-273c-4f4f-bbb5-6d2e377505c6.dat' 'renamed_parts/p19_tet-on-3g.gb' && cp '/tmp/tmp0ydceoto/files/b/b/0/dataset_bb0a84b0-5e87-4571-a34e-9d0ec585ade6.dat' 'renamed_parts/p1_5__sq__-itr-pb.gb' && cp '/tmp/tmp0ydceoto/files/9/d/f/dataset_9df4bee9-bcd8-4c07-9965-c14ecc5a7523.dat' 'renamed_parts/p1_5__sq__ha-haavs1.gb' && cp '/tmp/tmp0ydceoto/files/e/a/9/dataset_ea911227-a70a-4047-a4b1-a0952db3fd55.dat' 'renamed_parts/p20_ct-minute-nes.gb' && cp '/tmp/tmp0ydceoto/files/7/4/e/dataset_74e2048b-65db-4796-9bec-662eab67deb0.dat' 'renamed_parts/p20_ct-nes.gb' && cp '/tmp/tmp0ydceoto/files/e/6/4/dataset_e648a437-853b-4c05-a16c-3e8f4bb2c113.dat' 'renamed_parts/p20_linker3.gb' && cp '/tmp/tmp0ydceoto/files/0/e/d/dataset_0ed521aa-4ec6-46fa-a297-21891b479c20.dat' 'renamed_parts/p20_p2a.gb' && cp '/tmp/tmp0ydceoto/files/3/8/1/dataset_38193690-84f7-4ba6-85cc-c7b3c0a88e54.dat' 'renamed_parts/p21_dmra.gb' && cp '/tmp/tmp0ydceoto/files/3/4/b/dataset_34b67f37-6f60-4898-b882-b44bb93447da.dat' 'renamed_parts/p21_mkate2.gb' && cp '/tmp/tmp0ydceoto/files/9/f/c/dataset_9fcf662b-8e4e-4c54-9c35-49402890eba1.dat' 'renamed_parts/p21_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/f/c/1/dataset_fc1d3165-3e19-42a2-8215-69bdd695d019.dat' 'renamed_parts/p21_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/7/f/e/dataset_7fe5c4d2-4c39-4d01-aa4d-ca84a8c967b3.dat' 'renamed_parts/p21_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/f/b/1/dataset_fb18e018-d689-4ae2-b403-3ebd1295d76f.dat' 'renamed_parts/p21_puror.gb' && cp '/tmp/tmp0ydceoto/files/7/e/7/dataset_7e7fe3fe-ae42-48ff-9eab-b33b48d97574.dat' 'renamed_parts/p22_pgkpolya.gb' && cp '/tmp/tmp0ydceoto/files/8/5/d/dataset_85d172f3-3afc-436c-808b-c231337af71d.dat' 'renamed_parts/p23_insulatorfb.gb' && cp '/tmp/tmp0ydceoto/files/4/a/7/dataset_4a77603d-048a-4950-9e4a-a518d7670982.dat' 'renamed_parts/p24_3__sq__ha_haavs1.gb' && cp '/tmp/tmp0ydceoto/files/c/d/f/dataset_cdfffc6a-ae64-4472-8032-f26af8ee4af4.dat' 'renamed_parts/p24_3__sq__pb.gb' && cp '/tmp/tmp0ydceoto/files/d/1/b/dataset_d1b20a1c-2319-46b2-823a-79166edc0c52.dat' 'renamed_parts/p25_sv40-ori.gb' && cp '/tmp/tmp0ydceoto/files/f/7/6/dataset_f762d9e6-871f-4117-8249-3cebfa3a3f89.dat' 'renamed_parts/p2_insulatorfb.gb' && cp '/tmp/tmp0ydceoto/files/7/a/9/dataset_7a99f7cb-c7ff-407f-8f11-c2e140b6d5d6.dat' 'renamed_parts/p3_cagp.gb' && cp '/tmp/tmp0ydceoto/files/3/9/2/dataset_392ccfd3-aa33-4332-9004-f0bb301f0c5e.dat' 'renamed_parts/p3_cmvp_tet.gb' && cp '/tmp/tmp0ydceoto/files/f/7/5/dataset_f7516a4e-24d5-4210-ba62-413b7fb1afea.dat' 'renamed_parts/p3_ef1ap.gb' && cp '/tmp/tmp0ydceoto/files/b/9/e/dataset_b9ec2caf-3066-44c6-97f2-2ae528d378a5.dat' 'renamed_parts/p3_tre3gp.gb' && cp '/tmp/tmp0ydceoto/files/0/2/f/dataset_02f90639-a331-45c6-a127-e222960c4a08.dat' 'renamed_parts/p4_kt-l7ae -weiss.gb' && cp '/tmp/tmp0ydceoto/files/0/f/6/dataset_0f6a4da2-afcc-482d-9025-bf2e76f4acaf.dat' 'renamed_parts/p4_lac-o.gb' && cp '/tmp/tmp0ydceoto/files/1/1/7/dataset_11774373-390f-4d7a-98a1-0604731a4d8f.dat' 'renamed_parts/p5_attb-bxb1.gb' && cp '/tmp/tmp0ydceoto/files/a/d/d/dataset_add7a830-87db-4459-bc6e-2c2283958ea0.dat' 'renamed_parts/p5_attp-bxb1.gb' && cp '/tmp/tmp0ydceoto/files/8/5/e/dataset_85e5c521-9efe-47ac-aef0-91a6c5229f50.dat' 'renamed_parts/p5_k1-k1.gb' && cp '/tmp/tmp0ydceoto/files/6/2/0/dataset_62094f39-890a-4d0b-8cf3-591cd021ce9c.dat' 'renamed_parts/p5_kt-weiss.gb' && cp '/tmp/tmp0ydceoto/files/f/1/5/dataset_f152d7bb-ad30-4ccd-8207-5654724cf7e5.dat' 'renamed_parts/p6_atg_boxc.gb' && cp '/tmp/tmp0ydceoto/files/6/5/7/dataset_6575f530-611f-4bca-a4d9-05222e5203f2.dat' 'renamed_parts/p6_kozak-atg.gb' && cp '/tmp/tmp0ydceoto/files/f/c/6/dataset_fc6a84cd-d41b-4397-987f-30ee576aa780.dat' 'renamed_parts/p6_nt-igkl sequence.gb' && cp '/tmp/tmp0ydceoto/files/8/8/2/dataset_88204589-84bc-46c7-9f52-b38944550507.dat' 'renamed_parts/p6_nt-mls.gb' && cp '/tmp/tmp0ydceoto/files/d/f/7/dataset_df79a614-887c-442e-9865-6852108f8222.dat' 'renamed_parts/p6_nt-myristoylation signal.gb' && cp '/tmp/tmp0ydceoto/files/1/2/a/dataset_12aedac0-2391-4051-9f17-174be52b9662.dat' 'renamed_parts/p6_nt-palm sequence.gb' && cp '/tmp/tmp0ydceoto/files/f/1/d/dataset_f1dbc32c-4f5a-4681-838f-19bc4c71fa2f.dat' 'renamed_parts/p6_nt-sv40_nls.gb' && cp '/tmp/tmp0ydceoto/files/c/6/2/dataset_c62e7833-23b5-49fb-a7a1-5fb1e6fabb05.dat' 'renamed_parts/p7_bxb1.gb' && cp '/tmp/tmp0ydceoto/files/a/4/1/dataset_a41b8798-b761-488e-9a86-ec14d0d491fc.dat' 'renamed_parts/p7_l7ae-weiss.gb' && cp '/tmp/tmp0ydceoto/files/c/4/6/dataset_c464bd41-b48b-4ef5-b0c5-30286d998460.dat' 'renamed_parts/p7_l7ae.gb' && cp '/tmp/tmp0ydceoto/files/7/6/4/dataset_76407fa5-735e-4b91-80b7-c4f3729b586e.dat' 'renamed_parts/p7_laci.gb' && cp '/tmp/tmp0ydceoto/files/2/e/b/dataset_2ebde537-fb9b-4c0e-a7b6-ec26b11bab47.dat' 'renamed_parts/p7_mcherry.gb' && cp '/tmp/tmp0ydceoto/files/4/3/1/dataset_431efdfb-451e-4476-a48e-38d32fe8aba5.dat' 'renamed_parts/p7_mkate2.gb' && cp '/tmp/tmp0ydceoto/files/7/0/b/dataset_70b483ce-4ce9-4ce7-8914-0777ae52e74f.dat' 'renamed_parts/p7_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/f/6/2/dataset_f6245ab0-1592-440e-a30b-684f25d7e1d6.dat' 'renamed_parts/p7_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/e/7/2/dataset_e72d8278-a302-4cd7-9fbe-3b2c1b169f75.dat' 'renamed_parts/p7_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/f/5/1/dataset_f516fe0e-4c70-43df-9726-a063feca9a98.dat' 'renamed_parts/p8_linker1.gb' && cp '/tmp/tmp0ydceoto/files/f/a/3/dataset_fa310315-fcef-4363-8c86-232ba468be40.dat' 'renamed_parts/p8_linker2.gb' && cp '/tmp/tmp0ydceoto/files/c/8/8/dataset_c881aff8-cc4e-44ff-bf3a-f1ee69a6c614.dat' 'renamed_parts/p8_p2a.gb' && cp '/tmp/tmp0ydceoto/files/f/1/0/dataset_f10fd428-612f-4345-af58-5245625ef266.dat' 'renamed_parts/p8a_ct-kdel.gb' && cp '/tmp/tmp0ydceoto/files/f/0/4/dataset_f0496174-1601-4171-a2ce-c628e0d4856c.dat' 'renamed_parts/p8b_ires2.gb' && cp '/tmp/tmp0ydceoto/files/3/0/b/dataset_30bf0025-645c-4f13-bea8-ac517dd0ebe8.dat' 'renamed_parts/p9_a-tubulin.gb' && cp '/tmp/tmp0ydceoto/files/d/3/2/dataset_d32961f3-478c-412e-baa6-891078b011b1.dat' 'renamed_parts/p9_bsdr.gb' && cp '/tmp/tmp0ydceoto/files/3/9/3/dataset_3938bfc7-0714-42bf-b89d-6a65e4ec36f0.dat' 'renamed_parts/p9_dmrc.gb' && cp '/tmp/tmp0ydceoto/files/3/5/9/dataset_359518b6-92dc-4bbb-8ced-0e3870df5ce4.dat' 'renamed_parts/p9_firefly luciferase.gb' && cp '/tmp/tmp0ydceoto/files/4/e/1/dataset_4e11454d-dda0-424d-bd87-9045c9009fdf.dat' 'renamed_parts/p9_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/c/4/a/dataset_c4aea875-9128-4585-af6c-f5847f741e63.dat' 'renamed_parts/p9_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/6/0/7/dataset_607ebecc-824f-42c7-986d-a540cc5b1f90.dat' 'renamed_parts/p9_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/e/e/a/dataset_eea27f95-4f71-4059-bade-0977dbd97887.dat' 'renamed_parts/p9_neor.gb' && cp '/tmp/tmp0ydceoto/files/2/5/8/dataset_2584d44d-c26a-4992-b225-8ed6b148d1a1.dat' 'renamed_parts/p9_puror.gb' && cp '/tmp/tmp0ydceoto/files/f/b/d/dataset_fbd5f45a-db4e-4310-b89b-71f6e07dd7b1.dat' 'source_plate.xlsx' && python '/home/rkhaled/galaxytools/tools/create_assembly_picklists/CreateAssemblyPicklists_script.py' --parts_files 'renamed_parts/HC_Amp_ccdB.gb,renamed_parts/conn a-c.gb,renamed_parts/conn b-e.gb,renamed_parts/conn b-l.gb,renamed_parts/conn d-e.gb,renamed_parts/conn d-f.gb,renamed_parts/conn h-ha.gb,renamed_parts/conn h-j.gb,renamed_parts/conn h-k.gb,renamed_parts/conn j-k.gb,renamed_parts/conn l-n.gb,renamed_parts/conn l-r.gb,renamed_parts/conn l-w.gb,renamed_parts/conn l-y.gb,renamed_parts/conn q-r.gb,renamed_parts/conn r-w.gb,renamed_parts/conn t-v.gb,renamed_parts/conn w-x.gb,renamed_parts/conn w-y.gb,renamed_parts/conn w-z.gb,renamed_parts/conn y-z.gb,renamed_parts/p10_tet-aptazyme.gb,renamed_parts/p11_sv40polya.gb,renamed_parts/p14_cmvp.gb,renamed_parts/p14_sv40p.gb,renamed_parts/p15_puror.gb,renamed_parts/p16_bghpolya.gb,renamed_parts/p18_cmvp.gb,renamed_parts/p18_ef1ap.gb,renamed_parts/p19_mneogreen.gb,renamed_parts/p19_mruby2.gb,renamed_parts/p19_mtagbfp2.gb,renamed_parts/p19_tet-on-3g.gb,renamed_parts/p1_5__sq__-itr-pb.gb,renamed_parts/p1_5__sq__ha-haavs1.gb,renamed_parts/p20_ct-minute-nes.gb,renamed_parts/p20_ct-nes.gb,renamed_parts/p20_linker3.gb,renamed_parts/p20_p2a.gb,renamed_parts/p21_dmra.gb,renamed_parts/p21_mkate2.gb,renamed_parts/p21_mneogreen.gb,renamed_parts/p21_mruby2.gb,renamed_parts/p21_mtagbfp2.gb,renamed_parts/p21_puror.gb,renamed_parts/p22_pgkpolya.gb,renamed_parts/p23_insulatorfb.gb,renamed_parts/p24_3__sq__ha_haavs1.gb,renamed_parts/p24_3__sq__pb.gb,renamed_parts/p25_sv40-ori.gb,renamed_parts/p2_insulatorfb.gb,renamed_parts/p3_cagp.gb,renamed_parts/p3_cmvp_tet.gb,renamed_parts/p3_ef1ap.gb,renamed_parts/p3_tre3gp.gb,renamed_parts/p4_kt-l7ae -weiss.gb,renamed_parts/p4_lac-o.gb,renamed_parts/p5_attb-bxb1.gb,renamed_parts/p5_attp-bxb1.gb,renamed_parts/p5_k1-k1.gb,renamed_parts/p5_kt-weiss.gb,renamed_parts/p6_atg_boxc.gb,renamed_parts/p6_kozak-atg.gb,renamed_parts/p6_nt-igkl sequence.gb,renamed_parts/p6_nt-mls.gb,renamed_parts/p6_nt-myristoylation signal.gb,renamed_parts/p6_nt-palm sequence.gb,renamed_parts/p6_nt-sv40_nls.gb,renamed_parts/p7_bxb1.gb,renamed_parts/p7_l7ae-weiss.gb,renamed_parts/p7_l7ae.gb,renamed_parts/p7_laci.gb,renamed_parts/p7_mcherry.gb,renamed_parts/p7_mkate2.gb,renamed_parts/p7_mneogreen.gb,renamed_parts/p7_mruby2.gb,renamed_parts/p7_mtagbfp2.gb,renamed_parts/p8_linker1.gb,renamed_parts/p8_linker2.gb,renamed_parts/p8_p2a.gb,renamed_parts/p8a_ct-kdel.gb,renamed_parts/p8b_ires2.gb,renamed_parts/p9_a-tubulin.gb,renamed_parts/p9_bsdr.gb,renamed_parts/p9_dmrc.gb,renamed_parts/p9_firefly luciferase.gb,renamed_parts/p9_mneogreen.gb,renamed_parts/p9_mruby2.gb,renamed_parts/p9_mtagbfp2.gb,renamed_parts/p9_neor.gb,renamed_parts/p9_puror.gb' --picklist '/tmp/tmp0ydceoto/files/4/7/6/dataset_476b4702-3a15-4ab3-8eba-ff48e0c9c800.dat' --source_plate 'source_plate.xlsx' --backbone_name '' --part_backbone_ratio '1.0' --quantity_unit 'fmol' --part_quantity '1.3' --buffer_volume '0.3' --total_volume '1.0' --dispenser 'labcyte_echo' --result_zip 'picklist.zip' && cp 'picklist.zip' '/tmp/tmp0ydceoto/job_working_directory/000/94/outputs/dataset_5577b1e6-0a74-454f-8434-bb44173c2949.dat'", - "command_version": "", - "copied_from_job_id": null, - "create_time": "2025-08-07T11:48:33.874987", - "dependencies": [], - "exit_code": 0, - "external_id": "91904", - "galaxy_version": "25.0", - "handler": null, - "history_id": "067da507497e9535", - "id": "9867cf632d3a75ca", - "inputs": { - "genbank_files1": { - "id": "067da507497e9535", - "src": "hda", - "uuid": "98e242c7-bb2d-4c6a-993f-60d0924e7b12" - }, - "genbank_files10": { - "id": "730ef7de33b6a074", - "src": "hda", - "uuid": "35da9184-3e25-4f54-bee6-e72f83102755" - }, - "genbank_files11": { - "id": "9ec3652ed189b162", - "src": "hda", - "uuid": "e6af64a1-def5-4d10-9cde-283077f60b4c" - }, - "genbank_files12": { - "id": "cb60416b25d6a27d", - "src": "hda", - "uuid": "ba0adc81-3a29-496c-90d2-03a45d7db04d" - }, - "genbank_files13": { - "id": "cf178643ca614123", - "src": "hda", - "uuid": "1fee6f8e-9293-44ee-b723-16e4a1f82621" - }, - "genbank_files14": { - "id": "e9e67aa1254b93cf", - "src": "hda", - "uuid": "2cdc6a4d-c6df-4984-9f0e-d33eab2102ed" - }, - "genbank_files15": { - "id": "ae9d784529d82488", - "src": "hda", - "uuid": "bb6e596f-8505-4540-bb5a-07e82e68e618" - }, - "genbank_files16": { - "id": "887f1358fb1e8ed5", - "src": "hda", - "uuid": "26e6438c-d8c4-4060-a3cb-64ce420d29aa" - }, - "genbank_files17": { - "id": "383bd0ad10951cd2", - "src": "hda", - "uuid": "47f34ade-a2bf-47f7-81d5-f60422427f54" - }, - "genbank_files18": { - "id": "1e3575f225b95edf", - "src": "hda", - "uuid": "56b82ca7-f29c-41b6-8c9d-b0dd504ddd48" - }, - "genbank_files19": { - "id": "2c11136954707ed7", - "src": "hda", - "uuid": "03feeb89-9a2d-47fd-afa5-26945035bf15" - }, - "genbank_files2": { - "id": "92cfed38021a5c69", - "src": "hda", - "uuid": "706c02af-8550-4889-b50b-e37fc930c2b1" - }, - "genbank_files20": { - "id": "619b07e917e78e53", - "src": "hda", - "uuid": "b77e96c7-12cb-451f-a14d-3fce6df601f3" - }, - "genbank_files21": { - "id": "feb70b6fc93e2db9", - "src": "hda", - "uuid": "95ce0fe6-8b94-493b-b323-9b270c4e8f18" - }, - "genbank_files22": { - "id": "cf4acd5e6b78fb3a", - "src": "hda", - "uuid": "97be599e-6b31-4110-9a0b-10383325b111" - }, - "genbank_files23": { - "id": "bec53a4c48ead790", - "src": "hda", - "uuid": "c9e7913a-6a39-4319-b971-9ed673c2ea39" - }, - "genbank_files24": { - "id": "c67f430f960661f5", - "src": "hda", - "uuid": "59adb3cf-407d-4599-9d9a-5f587cd25554" - }, - "genbank_files25": { - "id": "9fa18aaeb6e01a43", - "src": "hda", - "uuid": "dd9d0e48-3556-447d-8249-10e99d87e282" - }, - "genbank_files26": { - "id": "b6256bddfd15f575", - "src": "hda", - "uuid": "b5c7a9d1-8f46-44a3-8e21-5f1c4588a561" - }, - "genbank_files27": { - "id": "bbd83a3f36ccc108", - "src": "hda", - "uuid": "f27a4a37-4b5b-41fb-9a3e-6ee628d65484" - }, - "genbank_files28": { - "id": "6ae6308e18593a82", - "src": "hda", - "uuid": "11506f9a-efb5-40c2-a53b-4be66e599522" - }, - "genbank_files29": { - "id": "23d41c6ce1908671", - "src": "hda", - "uuid": "793e3968-9e5c-48e6-9028-4fc83aa2756c" - }, - "genbank_files3": { - "id": "bdd66ec74adae686", - "src": "hda", - "uuid": "5909bed2-47ee-425f-ab79-ab035b75853f" - }, - "genbank_files30": { - "id": "1310b533ca3fb513", - "src": "hda", - "uuid": "249c9893-8284-4e48-8c2e-221581bab86b" - }, - "genbank_files31": { - "id": "44c77c2063a2a92d", - "src": "hda", - "uuid": "6700067a-7c9d-4ff7-8468-05833c913411" - }, - "genbank_files32": { - "id": "7278d240201a27cd", - "src": "hda", - "uuid": "83a510c2-7eab-4453-9716-9220f302deea" - }, - "genbank_files33": { - "id": "7d20d37e193c0649", - "src": "hda", - "uuid": "5c7c27c6-273c-4f4f-bbb5-6d2e377505c6" - }, - "genbank_files34": { - "id": "53bb062a1b2b469f", - "src": "hda", - "uuid": "bb0a84b0-5e87-4571-a34e-9d0ec585ade6" - }, - "genbank_files35": { - "id": "fdc714af223973d6", - "src": "hda", - "uuid": "9df4bee9-bcd8-4c07-9965-c14ecc5a7523" - }, - "genbank_files36": { - "id": "299c733579898c71", - "src": "hda", - "uuid": "ea911227-a70a-4047-a4b1-a0952db3fd55" - }, - "genbank_files37": { - "id": "d4ce291b82e9475e", - "src": "hda", - "uuid": "74e2048b-65db-4796-9bec-662eab67deb0" - }, - "genbank_files38": { - "id": "a18c423b4c601c11", - "src": "hda", - "uuid": "e648a437-853b-4c05-a16c-3e8f4bb2c113" - }, - "genbank_files39": { - "id": "c33db77b38530d73", - "src": "hda", - "uuid": "0ed521aa-4ec6-46fa-a297-21891b479c20" - }, - "genbank_files4": { - "id": "5b484549b7c18357", - "src": "hda", - "uuid": "4b0aa290-5223-4524-8509-ada73918d8ec" - }, - "genbank_files40": { - "id": "8f694672d2669624", - "src": "hda", - "uuid": "38193690-84f7-4ba6-85cc-c7b3c0a88e54" - }, - "genbank_files41": { - "id": "6d63c040abdc7363", - "src": "hda", - "uuid": "34b67f37-6f60-4898-b882-b44bb93447da" - }, - "genbank_files42": { - "id": "95d8f393e867ad81", - "src": "hda", - "uuid": "9fcf662b-8e4e-4c54-9c35-49402890eba1" - }, - "genbank_files43": { - "id": "0005c53a7cfc8eb5", - "src": "hda", - "uuid": "fc1d3165-3e19-42a2-8215-69bdd695d019" - }, - "genbank_files44": { - "id": "796c8c3ce9a30cfd", - "src": "hda", - "uuid": "7fe5c4d2-4c39-4d01-aa4d-ca84a8c967b3" - }, - "genbank_files45": { - "id": "6cd68f7e37508c46", - "src": "hda", - "uuid": "fb18e018-d689-4ae2-b403-3ebd1295d76f" - }, - "genbank_files46": { - "id": "814ea56a05137bdf", - "src": "hda", - "uuid": "7e7fe3fe-ae42-48ff-9eab-b33b48d97574" - }, - "genbank_files47": { - "id": "e1b95b0d48771956", - "src": "hda", - "uuid": "85d172f3-3afc-436c-808b-c231337af71d" - }, - "genbank_files48": { - "id": "b290bae5d935b403", - "src": "hda", - "uuid": "4a77603d-048a-4950-9e4a-a518d7670982" - }, - "genbank_files49": { - "id": "ad451ca48e00741a", - "src": "hda", - "uuid": "cdfffc6a-ae64-4472-8032-f26af8ee4af4" - }, - "genbank_files5": { - "id": "4e7e7f016a86577d", - "src": "hda", - "uuid": "3872b70b-b354-4fe6-8490-9c292c405b74" - }, - "genbank_files50": { - "id": "bcb3ce1a38c4b104", - "src": "hda", - "uuid": "d1b20a1c-2319-46b2-823a-79166edc0c52" - }, - "genbank_files51": { - "id": "9c90ae965c635272", - "src": "hda", - "uuid": "f762d9e6-871f-4117-8249-3cebfa3a3f89" - }, - "genbank_files52": { - "id": "0da938507d913311", - "src": "hda", - "uuid": "7a99f7cb-c7ff-407f-8f11-c2e140b6d5d6" - }, - "genbank_files53": { - "id": "958cc3936bc9813c", - "src": "hda", - "uuid": 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"f1dbc32c-4f5a-4681-838f-19bc4c71fa2f" - }, - "genbank_files69": { - "id": "bbfd12d2871427a0", - "src": "hda", - "uuid": "c62e7833-23b5-49fb-a7a1-5fb1e6fabb05" - }, - "genbank_files7": { - "id": "88dc1a0d8d260d97", - "src": "hda", - "uuid": "5644a108-e049-4fb7-8cb7-dece2f08b8b1" - }, - "genbank_files70": { - "id": "d881d2df1531cda2", - "src": "hda", - "uuid": "a41b8798-b761-488e-9a86-ec14d0d491fc" - }, - "genbank_files71": { - "id": "f616d37609c8e4ea", - "src": "hda", - "uuid": "c464bd41-b48b-4ef5-b0c5-30286d998460" - }, - "genbank_files72": { - "id": "0cc3b64ff9710a93", - "src": "hda", - "uuid": "76407fa5-735e-4b91-80b7-c4f3729b586e" - }, - "genbank_files73": { - "id": "a841d3810d10ed5a", - "src": "hda", - "uuid": "2ebde537-fb9b-4c0e-a7b6-ec26b11bab47" - }, - "genbank_files74": { - "id": "706bd39a757b7159", - "src": "hda", - "uuid": "431efdfb-451e-4476-a48e-38d32fe8aba5" - }, - "genbank_files75": { - "id": "50cb93bf8b17de68", - "src": "hda", - "uuid": 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"f0496174-1601-4171-a2ce-c628e0d4856c" - }, - "genbank_files83": { - "id": "063272cc8e921886", - "src": "hda", - "uuid": "30bf0025-645c-4f13-bea8-ac517dd0ebe8" - }, - "genbank_files84": { - "id": "12974cb3cf85f1fe", - "src": "hda", - "uuid": "d32961f3-478c-412e-baa6-891078b011b1" - }, - "genbank_files85": { - "id": "225cc8eda0aa749a", - "src": "hda", - "uuid": "3938bfc7-0714-42bf-b89d-6a65e4ec36f0" - }, - "genbank_files86": { - "id": "f08568af89e935cc", - "src": "hda", - "uuid": "359518b6-92dc-4bbb-8ced-0e3870df5ce4" - }, - "genbank_files87": { - "id": "f12df5232f6246eb", - "src": "hda", - "uuid": "4e11454d-dda0-424d-bd87-9045c9009fdf" - }, - "genbank_files88": { - "id": "3f91153085115f04", - "src": "hda", - "uuid": "c4aea875-9128-4585-af6c-f5847f741e63" - }, - "genbank_files89": { - "id": "340cfe9b64bb6142", - "src": "hda", - "uuid": "607ebecc-824f-42c7-986d-a540cc5b1f90" - }, - "genbank_files9": { - "id": "ff914a76a2ec67d1", - "src": "hda", - "uuid": "d5df7192-76d1-46dd-9f65-721f4f04c0ae" - }, - "genbank_files90": { - "id": "dad307427fc765c9", - "src": "hda", - "uuid": "eea27f95-4f71-4059-bade-0977dbd97887" - }, - "genbank_files91": { - "id": "6b0ca75879059c27", - "src": "hda", - "uuid": "2584d44d-c26a-4992-b225-8ed6b148d1a1" - }, - "picklist": { - "id": "378a03a7f52f85cb", - "src": "hda", - "uuid": "476b4702-3a15-4ab3-8eba-ff48e0c9c800" - }, - "source_plate": { - "id": "56352d47c35661a0", - "src": "hda", - "uuid": "fbd5f45a-db4e-4310-b89b-71f6e07dd7b1" - } - }, - "job_messages": [], - "job_metrics": [], - "job_runner_name": null, - "job_stderr": "", - "job_stdout": "", - "model_class": "Job", - "output_collections": {}, - "outputs": { - "output_zip": { - "id": "9867cf632d3a75ca", - "src": "hda", - "uuid": "5577b1e6-0a74-454f-8434-bb44173c2949" - } - }, - "params": { - "__input_ext": "\"input\"", - "chromInfo": "\"/tmp/tmp0ydceoto/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", - "dbkey": "\"?\"", - "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}", - "setting": "{\"__current_case__\": 0, \"adv\": {\"backbone_name\": null, \"part_backbone_ratio\": \"1.0\"}, \"buffer_volume\": \"0.3\", \"dispenser\": \"labcyte_echo\", \"mode\": \"std\", \"part_quantity\": \"1.3\", \"quantity_unit\": \"fmol\", \"total_volume\": \"1.0\"}" - }, - "state": "ok", - "stderr": "", - "stdout": "Generating picklist\nWriting report...\nsuccess: True\n", - "tool_id": "create_assembly_picklists", - "tool_stderr": "", - "tool_stdout": "Generating picklist\nWriting report...\nsuccess: True\n", - "update_time": "2025-08-07T11:48:46.968084", - "user_email": "planemo@galaxyproject.org", - "user_id": "067da507497e9535" - }, - "status": "success", - "test_index": 0, - "time_seconds": 246.3670883178711, - "tool_id": "create_assembly_picklists", - "tool_version": "0.1.0+galaxy0" - }, - "has_data": true, - "id": "create_assembly_picklists-0" - }, - { - "data": { - "inputs": { - "genbank_files": { - "id": "92cfed38021a5c69", - "src": "hdca" - }, - "picklist": { - "id": "c4b01b0c9b702972", - "src": "hda" - }, - "setting|mode": "demo", - "source_plate": { - "id": "b7750f283af90792", - "src": "hda" - } - }, - "job": { - "command_line": "mkdir renamed_parts && touch 'picklist.zip' && touch 'source_plate.xlsx' && cp '/tmp/tmp0ydceoto/files/1/9/8/dataset_198403a7-756b-4adb-9c71-6b04c76232ba.dat' 'renamed_parts/HC_Amp_ccdB.gb' && cp '/tmp/tmp0ydceoto/files/e/2/4/dataset_e24efb8a-92a1-430f-b4a5-beca22d8461c.dat' 'renamed_parts/conn a-c.gb' && cp '/tmp/tmp0ydceoto/files/7/e/f/dataset_7ef130e3-1782-4a2a-a9ff-a36708d77ee9.dat' 'renamed_parts/conn b-e.gb' && cp '/tmp/tmp0ydceoto/files/3/6/f/dataset_36f9e835-69da-4d0c-bd41-e7ea9545b913.dat' 'renamed_parts/conn b-l.gb' && cp '/tmp/tmp0ydceoto/files/8/4/2/dataset_84237abf-d07a-4650-93d9-1ce9adff888e.dat' 'renamed_parts/conn d-e.gb' && cp '/tmp/tmp0ydceoto/files/8/b/7/dataset_8b709288-1dc2-46f1-aed0-06558a81c6a4.dat' 'renamed_parts/conn d-f.gb' && cp '/tmp/tmp0ydceoto/files/0/9/7/dataset_097028a3-31bc-4e98-a54b-87e626752fa6.dat' 'renamed_parts/conn h-ha.gb' && cp '/tmp/tmp0ydceoto/files/1/d/a/dataset_1dab757a-b560-49f2-af0e-3181d65bc7fa.dat' 'renamed_parts/conn h-j.gb' && cp '/tmp/tmp0ydceoto/files/4/6/5/dataset_465670fa-5803-4fed-b506-6b3d9d19e627.dat' 'renamed_parts/conn h-k.gb' && cp '/tmp/tmp0ydceoto/files/3/4/6/dataset_346984c6-1883-49b8-8803-56f10d36878c.dat' 'renamed_parts/conn j-k.gb' && cp '/tmp/tmp0ydceoto/files/7/6/a/dataset_76a14ed2-0eec-4d98-9dea-7b9066f21cab.dat' 'renamed_parts/conn l-n.gb' && cp '/tmp/tmp0ydceoto/files/b/3/8/dataset_b380208b-c50c-48cf-81d8-a70e8a7ccaf5.dat' 'renamed_parts/conn l-r.gb' && cp '/tmp/tmp0ydceoto/files/0/c/2/dataset_0c260d99-6fcb-4c46-bab8-ce95db040988.dat' 'renamed_parts/conn l-w.gb' && cp '/tmp/tmp0ydceoto/files/8/e/8/dataset_8e8e81bf-1c45-4a2b-a4ab-00ea8bc77f6a.dat' 'renamed_parts/conn l-y.gb' && cp '/tmp/tmp0ydceoto/files/3/a/4/dataset_3a4d0f89-817b-467d-9cd2-3f6ac162c9eb.dat' 'renamed_parts/conn q-r.gb' && cp '/tmp/tmp0ydceoto/files/4/2/f/dataset_42f44d5a-f8de-491b-9353-d301aeee8fe0.dat' 'renamed_parts/conn r-w.gb' && cp '/tmp/tmp0ydceoto/files/d/d/e/dataset_dde5d53a-7311-4192-9869-d7b954d0667f.dat' 'renamed_parts/conn t-v.gb' && cp '/tmp/tmp0ydceoto/files/a/d/9/dataset_ad9aa7c3-77f5-458f-b90b-7e8a9a8bb151.dat' 'renamed_parts/conn w-x.gb' && cp '/tmp/tmp0ydceoto/files/3/f/c/dataset_3fcd0f95-6243-4166-b733-b21f944f3b3d.dat' 'renamed_parts/conn w-y.gb' && cp '/tmp/tmp0ydceoto/files/5/9/3/dataset_593decdb-cfeb-4d63-947f-513b80b92d88.dat' 'renamed_parts/conn w-z.gb' && cp '/tmp/tmp0ydceoto/files/f/8/4/dataset_f8483e3b-d42b-4544-b9a7-80273613990f.dat' 'renamed_parts/conn y-z.gb' && cp '/tmp/tmp0ydceoto/files/6/4/3/dataset_643a759a-32aa-40f3-8639-d989e58d722b.dat' 'renamed_parts/p10_tet-aptazyme.gb' && cp '/tmp/tmp0ydceoto/files/f/d/6/dataset_fd61bdb7-1229-4884-959e-9cf1d18d1aff.dat' 'renamed_parts/p11_sv40polya.gb' && cp '/tmp/tmp0ydceoto/files/6/a/6/dataset_6a6b6c19-33c5-447b-8728-15f325b3d5d1.dat' 'renamed_parts/p14_cmvp.gb' && cp '/tmp/tmp0ydceoto/files/1/9/7/dataset_1979afe0-392d-4ce5-8f72-c58ba3ed96ea.dat' 'renamed_parts/p14_sv40p.gb' && cp '/tmp/tmp0ydceoto/files/6/b/c/dataset_6bc8a588-5c0e-444b-89d5-7dd1c7faaa71.dat' 'renamed_parts/p15_puror.gb' && cp '/tmp/tmp0ydceoto/files/e/6/4/dataset_e64c3c46-6558-4cf3-8c88-69c77f62cb63.dat' 'renamed_parts/p16_bghpolya.gb' && cp '/tmp/tmp0ydceoto/files/5/3/5/dataset_535132ae-f8fb-49fe-80b2-0f7ab7caee25.dat' 'renamed_parts/p18_cmvp.gb' && cp '/tmp/tmp0ydceoto/files/a/6/f/dataset_a6f9f2ee-64a3-4f3e-8139-507c8c4485de.dat' 'renamed_parts/p18_ef1ap.gb' && cp '/tmp/tmp0ydceoto/files/8/f/f/dataset_8ff4183e-81f3-4749-b3e8-8b5d8d8d52d2.dat' 'renamed_parts/p19_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/6/b/2/dataset_6b212a48-238f-4a10-9e37-00f95265015a.dat' 'renamed_parts/p19_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/f/6/a/dataset_f6ae9a71-e2c6-48bd-95d0-84c5cdf31d83.dat' 'renamed_parts/p19_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/e/9/1/dataset_e915eaf7-ebed-4d93-924b-6897f5be73d9.dat' 'renamed_parts/p19_tet-on-3g.gb' && cp '/tmp/tmp0ydceoto/files/2/e/a/dataset_2eaadbb4-e9ff-45f0-9cab-5b712150ed8d.dat' 'renamed_parts/p1_5__sq__-itr-pb.gb' && cp '/tmp/tmp0ydceoto/files/0/a/d/dataset_0ada3d83-1af4-4996-9156-075fd57c4454.dat' 'renamed_parts/p1_5__sq__ha-haavs1.gb' && cp '/tmp/tmp0ydceoto/files/1/d/8/dataset_1d8164e6-cb1a-4d36-8d16-d3c4dbcb167f.dat' 'renamed_parts/p20_ct-minute-nes.gb' && cp '/tmp/tmp0ydceoto/files/9/0/b/dataset_90bdb7d1-12bd-49d1-bc78-b0b2d71bab3d.dat' 'renamed_parts/p20_ct-nes.gb' && cp '/tmp/tmp0ydceoto/files/2/9/f/dataset_29faffc2-f639-4b40-81c8-fddfe27ad6fa.dat' 'renamed_parts/p20_linker3.gb' && cp '/tmp/tmp0ydceoto/files/7/b/9/dataset_7b90e8c5-e344-4bab-8b33-80ca4736a4e0.dat' 'renamed_parts/p20_p2a.gb' && cp '/tmp/tmp0ydceoto/files/7/4/7/dataset_74768e17-1b20-449e-a454-0d88b381793a.dat' 'renamed_parts/p21_dmra.gb' && cp '/tmp/tmp0ydceoto/files/f/8/3/dataset_f83dd54f-16c0-4880-af3f-452997d53603.dat' 'renamed_parts/p21_mkate2.gb' && cp '/tmp/tmp0ydceoto/files/f/7/8/dataset_f78517ca-1b4b-441d-8f05-44034f31d02e.dat' 'renamed_parts/p21_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/3/9/c/dataset_39c7eb84-93bc-496c-b076-07462498e84c.dat' 'renamed_parts/p21_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/9/0/e/dataset_90e5e26c-3109-4176-981a-d17d8619a45b.dat' 'renamed_parts/p21_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/3/5/9/dataset_359a01ac-a677-489f-8ab5-deeca42f2c91.dat' 'renamed_parts/p21_puror.gb' && cp '/tmp/tmp0ydceoto/files/9/9/0/dataset_990cb2b4-99ec-438a-9276-dad0f34b0238.dat' 'renamed_parts/p22_pgkpolya.gb' && cp '/tmp/tmp0ydceoto/files/d/4/0/dataset_d4048951-3ecb-4214-9e4a-d062fd9169ea.dat' 'renamed_parts/p23_insulatorfb.gb' && cp '/tmp/tmp0ydceoto/files/9/2/8/dataset_928034e7-bf71-4de4-a759-02f77b5053d3.dat' 'renamed_parts/p24_3__sq__ha_haavs1.gb' && cp '/tmp/tmp0ydceoto/files/1/c/a/dataset_1ca90c95-4626-44ec-9fe2-ad79ca4c8a27.dat' 'renamed_parts/p24_3__sq__pb.gb' && cp '/tmp/tmp0ydceoto/files/8/1/b/dataset_81b366b6-1d31-4d0d-8a52-2dad534a9fc5.dat' 'renamed_parts/p25_sv40-ori.gb' && cp '/tmp/tmp0ydceoto/files/f/0/d/dataset_f0dccf9c-5a35-4a8c-8326-aa2b4aca3b18.dat' 'renamed_parts/p2_insulatorfb.gb' && cp '/tmp/tmp0ydceoto/files/d/e/e/dataset_dee5a94c-ced3-4442-aba5-b39437b02285.dat' 'renamed_parts/p3_cagp.gb' && cp '/tmp/tmp0ydceoto/files/1/b/b/dataset_1bbbd599-5e16-40a6-b47b-e2e48f0f0de0.dat' 'renamed_parts/p3_cmvp_tet.gb' && cp '/tmp/tmp0ydceoto/files/8/3/a/dataset_83a6bfe4-6c18-43ed-a07f-e3389f063f98.dat' 'renamed_parts/p3_ef1ap.gb' && cp '/tmp/tmp0ydceoto/files/0/8/5/dataset_08546349-4432-4a53-9fc9-84ed5b31b586.dat' 'renamed_parts/p3_tre3gp.gb' && cp '/tmp/tmp0ydceoto/files/5/d/e/dataset_5de1eb50-ca7f-43a5-89db-abeff13f9043.dat' 'renamed_parts/p4_kt-l7ae -weiss.gb' && cp '/tmp/tmp0ydceoto/files/6/4/b/dataset_64bea992-fc83-4ceb-9c97-6d8d2a81a8b9.dat' 'renamed_parts/p4_lac-o.gb' && cp '/tmp/tmp0ydceoto/files/e/a/5/dataset_ea563954-0c20-4616-aa70-f383816a7474.dat' 'renamed_parts/p5_attb-bxb1.gb' && cp '/tmp/tmp0ydceoto/files/2/5/6/dataset_256fc502-93d5-4c2d-8d18-e302b2959212.dat' 'renamed_parts/p5_attp-bxb1.gb' && cp '/tmp/tmp0ydceoto/files/7/8/0/dataset_78017c6f-92e1-4fb8-9075-8d117cfba4e8.dat' 'renamed_parts/p5_k1-k1.gb' && cp '/tmp/tmp0ydceoto/files/7/6/6/dataset_766fcab2-7747-4b94-bc28-26b6e22cab04.dat' 'renamed_parts/p5_kt-weiss.gb' && cp '/tmp/tmp0ydceoto/files/a/e/3/dataset_ae363793-6f19-49f1-b20d-259ad7718f30.dat' 'renamed_parts/p6_atg_boxc.gb' && cp '/tmp/tmp0ydceoto/files/c/1/7/dataset_c17bce1d-14e1-4619-af78-2ac77ba18fe7.dat' 'renamed_parts/p6_kozak-atg.gb' && cp '/tmp/tmp0ydceoto/files/2/6/a/dataset_26a1c9e7-d6e8-4615-9209-16fe2fbe1faf.dat' 'renamed_parts/p6_nt-igkl sequence.gb' && cp '/tmp/tmp0ydceoto/files/c/3/4/dataset_c345e0ef-86f4-4ee6-a182-7fd52efa0cfe.dat' 'renamed_parts/p6_nt-mls.gb' && cp '/tmp/tmp0ydceoto/files/2/7/d/dataset_27d3ab1c-9845-442c-a994-c6292c6a73a5.dat' 'renamed_parts/p6_nt-myristoylation signal.gb' && cp '/tmp/tmp0ydceoto/files/6/0/9/dataset_60981843-4b48-45ce-a71f-281122b68cc8.dat' 'renamed_parts/p6_nt-palm sequence.gb' && cp '/tmp/tmp0ydceoto/files/8/6/5/dataset_865f2ba2-191f-4799-879a-bcd613f9da14.dat' 'renamed_parts/p6_nt-sv40_nls.gb' && cp '/tmp/tmp0ydceoto/files/8/e/6/dataset_8e67746a-7703-448c-abbc-395cb020a4b8.dat' 'renamed_parts/p7_bxb1.gb' && cp '/tmp/tmp0ydceoto/files/6/e/9/dataset_6e9199e4-f21e-44e2-99d9-a2c027f106ed.dat' 'renamed_parts/p7_l7ae-weiss.gb' && cp '/tmp/tmp0ydceoto/files/0/6/a/dataset_06a1a212-98e9-4eac-8d8b-d5cdd867137a.dat' 'renamed_parts/p7_l7ae.gb' && cp '/tmp/tmp0ydceoto/files/f/e/c/dataset_fecef29e-552e-474d-ba4b-c51fad0f4922.dat' 'renamed_parts/p7_laci.gb' && cp '/tmp/tmp0ydceoto/files/4/9/c/dataset_49c55dca-d04f-412f-8712-73e373b436d1.dat' 'renamed_parts/p7_mcherry.gb' && cp '/tmp/tmp0ydceoto/files/c/f/b/dataset_cfbe43e3-9835-405e-ac7a-923b08ce9581.dat' 'renamed_parts/p7_mkate2.gb' && cp '/tmp/tmp0ydceoto/files/5/1/3/dataset_513eaaa8-7462-4733-b410-aa864f0b0810.dat' 'renamed_parts/p7_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/6/d/5/dataset_6d51b19a-8b15-4356-adf1-d6abe8522b14.dat' 'renamed_parts/p7_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/d/c/8/dataset_dc892718-aef4-4459-a682-57177895e5b3.dat' 'renamed_parts/p7_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/b/c/5/dataset_bc5a6b05-85a1-4e56-91e1-3f0d3887db91.dat' 'renamed_parts/p8_linker1.gb' && cp '/tmp/tmp0ydceoto/files/a/a/f/dataset_aaf214f6-284a-44dd-af09-c7d300c1abb6.dat' 'renamed_parts/p8_linker2.gb' && cp '/tmp/tmp0ydceoto/files/2/0/0/dataset_200e1143-fef7-43c2-b7ee-11d1e032ad14.dat' 'renamed_parts/p8_p2a.gb' && cp '/tmp/tmp0ydceoto/files/f/1/c/dataset_f1ce1a42-9ed8-4d6c-92a1-63a44b35478c.dat' 'renamed_parts/p8a_ct-kdel.gb' && cp '/tmp/tmp0ydceoto/files/f/4/d/dataset_f4d112d2-f30d-4c54-9dfa-2f63c21f02d5.dat' 'renamed_parts/p8b_ires2.gb' && cp '/tmp/tmp0ydceoto/files/6/8/7/dataset_687b01eb-5b2e-410d-b4f4-978a0387a279.dat' 'renamed_parts/p9_a-tubulin.gb' && cp '/tmp/tmp0ydceoto/files/3/3/c/dataset_33c5bd8f-98f0-4a29-b941-6e4d213e8b41.dat' 'renamed_parts/p9_bsdr.gb' && cp '/tmp/tmp0ydceoto/files/2/9/8/dataset_298bedc2-d0d8-433f-a172-b7e79ff626f8.dat' 'renamed_parts/p9_dmrc.gb' && cp '/tmp/tmp0ydceoto/files/f/9/f/dataset_f9fbd791-eaa9-4ccc-ac24-07f3e0159ed6.dat' 'renamed_parts/p9_firefly luciferase.gb' && cp '/tmp/tmp0ydceoto/files/9/c/c/dataset_9ccad459-4252-4ce5-ba0d-4b9875d16e82.dat' 'renamed_parts/p9_mneogreen.gb' && cp '/tmp/tmp0ydceoto/files/9/1/6/dataset_916de3aa-1a5e-4680-a0d4-06625f45324e.dat' 'renamed_parts/p9_mruby2.gb' && cp '/tmp/tmp0ydceoto/files/1/1/3/dataset_1139a059-2ec4-4cba-8208-b82d939f7111.dat' 'renamed_parts/p9_mtagbfp2.gb' && cp '/tmp/tmp0ydceoto/files/c/5/d/dataset_c5d830ed-a96b-4e00-9fae-8d7d78f36af4.dat' 'renamed_parts/p9_neor.gb' && cp '/tmp/tmp0ydceoto/files/2/7/1/dataset_2717fbe6-6335-408b-b72e-1926858873c5.dat' 'renamed_parts/p9_puror.gb' && cp '/tmp/tmp0ydceoto/files/7/f/8/dataset_7f8f2ee9-b946-4dc6-abee-24bd81f3a3cc.dat' 'source_plate.xlsx' && python '/home/rkhaled/galaxytools/tools/create_assembly_picklists/CreateAssemblyPicklists_script.py' --parts_files 'renamed_parts/HC_Amp_ccdB.gb,renamed_parts/conn a-c.gb,renamed_parts/conn b-e.gb,renamed_parts/conn b-l.gb,renamed_parts/conn d-e.gb,renamed_parts/conn d-f.gb,renamed_parts/conn h-ha.gb,renamed_parts/conn h-j.gb,renamed_parts/conn h-k.gb,renamed_parts/conn j-k.gb,renamed_parts/conn l-n.gb,renamed_parts/conn l-r.gb,renamed_parts/conn l-w.gb,renamed_parts/conn l-y.gb,renamed_parts/conn q-r.gb,renamed_parts/conn r-w.gb,renamed_parts/conn t-v.gb,renamed_parts/conn w-x.gb,renamed_parts/conn w-y.gb,renamed_parts/conn w-z.gb,renamed_parts/conn y-z.gb,renamed_parts/p10_tet-aptazyme.gb,renamed_parts/p11_sv40polya.gb,renamed_parts/p14_cmvp.gb,renamed_parts/p14_sv40p.gb,renamed_parts/p15_puror.gb,renamed_parts/p16_bghpolya.gb,renamed_parts/p18_cmvp.gb,renamed_parts/p18_ef1ap.gb,renamed_parts/p19_mneogreen.gb,renamed_parts/p19_mruby2.gb,renamed_parts/p19_mtagbfp2.gb,renamed_parts/p19_tet-on-3g.gb,renamed_parts/p1_5__sq__-itr-pb.gb,renamed_parts/p1_5__sq__ha-haavs1.gb,renamed_parts/p20_ct-minute-nes.gb,renamed_parts/p20_ct-nes.gb,renamed_parts/p20_linker3.gb,renamed_parts/p20_p2a.gb,renamed_parts/p21_dmra.gb,renamed_parts/p21_mkate2.gb,renamed_parts/p21_mneogreen.gb,renamed_parts/p21_mruby2.gb,renamed_parts/p21_mtagbfp2.gb,renamed_parts/p21_puror.gb,renamed_parts/p22_pgkpolya.gb,renamed_parts/p23_insulatorfb.gb,renamed_parts/p24_3__sq__ha_haavs1.gb,renamed_parts/p24_3__sq__pb.gb,renamed_parts/p25_sv40-ori.gb,renamed_parts/p2_insulatorfb.gb,renamed_parts/p3_cagp.gb,renamed_parts/p3_cmvp_tet.gb,renamed_parts/p3_ef1ap.gb,renamed_parts/p3_tre3gp.gb,renamed_parts/p4_kt-l7ae -weiss.gb,renamed_parts/p4_lac-o.gb,renamed_parts/p5_attb-bxb1.gb,renamed_parts/p5_attp-bxb1.gb,renamed_parts/p5_k1-k1.gb,renamed_parts/p5_kt-weiss.gb,renamed_parts/p6_atg_boxc.gb,renamed_parts/p6_kozak-atg.gb,renamed_parts/p6_nt-igkl sequence.gb,renamed_parts/p6_nt-mls.gb,renamed_parts/p6_nt-myristoylation signal.gb,renamed_parts/p6_nt-palm sequence.gb,renamed_parts/p6_nt-sv40_nls.gb,renamed_parts/p7_bxb1.gb,renamed_parts/p7_l7ae-weiss.gb,renamed_parts/p7_l7ae.gb,renamed_parts/p7_laci.gb,renamed_parts/p7_mcherry.gb,renamed_parts/p7_mkate2.gb,renamed_parts/p7_mneogreen.gb,renamed_parts/p7_mruby2.gb,renamed_parts/p7_mtagbfp2.gb,renamed_parts/p8_linker1.gb,renamed_parts/p8_linker2.gb,renamed_parts/p8_p2a.gb,renamed_parts/p8a_ct-kdel.gb,renamed_parts/p8b_ires2.gb,renamed_parts/p9_a-tubulin.gb,renamed_parts/p9_bsdr.gb,renamed_parts/p9_dmrc.gb,renamed_parts/p9_firefly 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