Mercurial > repos > tduigou > cloning_simulation

comparison test-data/BASIC_assembly_dataset/promoter.gb @ 0:dc450979fcd4 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 16 May 2025 09:39:03 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:dc450979fcd4
1 LOCUS promoter 4361 bp DNA circular UNK 01-JAN-1980
2 DEFINITION
3 ACCESSION
4 VERSION
5 SOURCE
6 ORGANISM
7 COMMENT Serial Cloner Genbank Format
8 COMMENT SerialCloner_Type=DNA
9 COMMENT SerialCloner_Comments=
10 COMMENT SerialCloner_Ends=0,0,,0,
11 FEATURES Location/Qualifiers
12 misc_feature 984..1028
13 /label=Linker01
14 /SerialCloner_Color=&h8000FF
15 /SerialCloner_Show=True
16 /SerialCloner_Protect=False
17 /SerialCloner_Arrow=True
18 misc_feature 1168..1212
19 /label=Linker02
20 /SerialCloner_Color=&h8000FF
21 /SerialCloner_Show=True
22 /SerialCloner_Protect=False
23 /SerialCloner_Arrow=True
24 misc_feature 1327..1361
25 /label=PJ23105
26 /SerialCloner_Color=&h84A4C0
27 /SerialCloner_Show=True
28 /SerialCloner_Protect=False
29 /SerialCloner_Arrow=True
30 primer_bind 4295..4314
31 /label=T7
32 /SerialCloner_Color=&h008B8B
33 /SerialCloner_Show=True
34 /SerialCloner_Protect=False
35 /SerialCloner_Arrow=True
36 rep_origin complement(2161..2789)
37 /label=ColE1 origin
38 /SerialCloner_Color=&h4682B4
39 /SerialCloner_Show=True
40 /SerialCloner_Protect=False
41 /SerialCloner_Arrow=True
42 CDS complement(2941..3600)
43 /label=AmpR
44 /SerialCloner_Color=&h8FBC8F
45 /SerialCloner_Show=True
46 /SerialCloner_Protect=False
47 /SerialCloner_Arrow=True
48 CDS 168..824
49 /label=CmR
50 /SerialCloner_Color=&h8FBC8F
51 /SerialCloner_Show=True
52 /SerialCloner_Protect=False
53 /SerialCloner_Arrow=True
54 Promoter complement(3840..3868)
55 /label=Amp prom
56 /SerialCloner_Color=&h4682B4
57 /SerialCloner_Show=True
58 /SerialCloner_Protect=False
59 /SerialCloner_Arrow=True
60 misc_feature 1033..1161
61 /label=terminator_B0015
62 /SerialCloner_Color=&h84A4C0
63 /SerialCloner_Show=True
64 /SerialCloner_Protect=False
65 /SerialCloner_Arrow=True
66 misc_feature 4295..4311
67 /label=T7-promoter
68 /SerialCloner_Color=&hFF00FF
69 /SerialCloner_Show=True
70 /SerialCloner_Protect=False
71 /SerialCloner_Arrow=True
72 misc_feature 1..18
73 /label=Prefix
74 /SerialCloner_Color=&hFF0080
75 /SerialCloner_Show=True
76 /SerialCloner_Protect=False
77 /SerialCloner_Arrow=True
78 misc_feature 1370..1387
79 /label=Suffix
80 /SerialCloner_Color=&hFF00FF
81 /SerialCloner_Show=True
82 /SerialCloner_Protect=False
83 /SerialCloner_Arrow=True
84 misc_feature 3601..3797
85 /label=pB1a promoter
86 /SerialCloner_Color=&h84A4C0
87 /SerialCloner_Show=True
88 /SerialCloner_Protect=False
89 /SerialCloner_Arrow=True
90 misc_feature 1327..1361
91 /label=ANDERSON 024
92 /SerialCloner_Color=&h84A4C0
93 /SerialCloner_Show=True
94 /SerialCloner_Protect=False
95 /SerialCloner_Arrow=True
96 ORIGIN
97 1 tctggtgggt ctctGTCCTT GATACCGGGA AGCCCTGGGC CAACTTTTGG CGAAAATGAG
98 61 ACGTTGATCG GCACGTAAGA GGTTCCAACT TTCACCATAA TGAAATAAGA TCACTACCGG
99 121 GCGTATTTTT TGAGTTATCG AGATTTTCAG GAGCTAAGGA AGCTAAAATG GAGAAAAAAA
100 181 TCACTGGATA TACCACCGTT GATATATCCC AATGGCATCG TAAAGAACAT TTTGAGGCAT
101 241 TTCAGTCAGT TGCTCAATGT ACCTATAACC AGACCGTTCA GCTGGATATT ACGGCCTTTT
102 301 TAAAGACCGT AAAGAAAAAT AAGCACAAGT TTTATCCGGC CTTTATTCAC ATTCTTGCCC
103 361 GCCTGATGAA TGCTCATCCG GAATTCCGTA TGGCAATGAA AGACGGTGAG CTGGTGATAT
104 421 GGGATAGTGT TCACCCTTGT TACACCGTTT TCCATGAGCA AACTGAAACG TTTTCATCGC
105 481 TCTGGAGTGA ATACCACGAC GATTTCCGGC AGTTTCTACA CATATATTCG CAAGATGTGG
106 541 CGTGTTACGG TGAAAACCTG GCCTATTTCC CTAAAGGGTT TATTGAGAAT ATGTTTTTCG
107 601 TCTCAGCCAA TCCCTGGGTG AGTTTCACCA GTTTTGATTT AAACGTGGCC AATATGGACA
108 661 ACTTCTTCGC CCCCGTTTTC ACCATGGGCA AATATTATAC GCAAGGCGAC AAGGTGCTGA
109 721 TGCCGCTGGC GATTCAGGTT CATCATGCCG TCTGTGATGG CTTCCATGTC GGCAGAATGC
110 781 TTAATGAATT ACAACAGTAC TGCGATGAGT GGCAGGGCGG GGCGTAATTT TTTTAAGGCA
111 841 GTTATTGGTG CCCTTAAACG CCTGGTGCTA CGCCTGAATA AGTGATAATA AGCGGATGAA
112 901 TGGCAGAAAT TCGAAAGCAA ATTCGACCCG GTCGTCGGTT CAGGGCAGGG TCGTTAAATA
113 961 GCCGCTTATG TCTATTGGGC TCGttactta cgacactccg agacagtcag agggtattta
114 1021 ttgaactaGT CCCCAGGCAT CAAATAAAAC GAAAGGCTCA GTCGAAAGAC TGGGCCTTTC
115 1081 GTTTTATCTG TTGTTTGTCG GTGAACGCTC TCTACTAGAG TCACACTGGC TCACCTTCGG
116 1141 GTGGGCCTTT CTGCGTTTAT AGGCTCGATC GGTGTGAAAA GTCAGTATCC AGTCGTGTAG
117 1201 TTCTTATTAC CTGTCCAGAC CTTTACGCCG CTGGAGACTA GTCACAGCTA ACACCACGTC
118 1261 GTCCCTATCT GCTGCCCTAG GTCTATGAGT GGTTGCTGGA TAACGAATTC GCGGCCGCTT
119 1321 CTAGAGTTTA CGGCTAGCTC AGTCCTAGGT ACTATGCTAG CTACTAGAGG GCTCGggaga
120 1381 cctatcgATC TTTCTAGAAG ATCTCCTACA ATATTCTCAG CTGCCATGGA AAATCGATGT
121 1441 TCTTCTTTTA TTCTCTCAAG ATTTTCAGGC TGTATATTAA AACTTATATT AAGAACTATG
122 1501 CTAACCACCT CATCAGGAAC CGTTGTAGGT GGCGTGGGTT TTCTTGGCAA TCGACTCTCA
123 1561 TGAAAACTAC GAGCTAAATA TTCAATATGT TCCTCTTGAC CAACTTTATT CTGCATTTTT
124 1621 TTTGAACGAG GTTTAGAGCA AGCTTCAGGA AACTGAGACA GGAATTTTAT TAAAAATTTA
125 1681 AATTTTGAAG AAAGTTCAGG GTTAATAGCA TCCATTTTTT GCTTTGCAAG TTCCTCAGCA
126 1741 TTCTTAACAA AAGACGTCTC TTTTGACATG TTTAAAGTTT AAACCTCCTG TGTGAAATTA
127 1801 TTATCCGCTC ATAATTCCAC ACATTATACG AGCCGGAAGC ATAAAGTGTA AAGCCTGGGG
128 1861 TGCCTAATGA GTGAGCTAAC TCACATTAAT TGCGTTGCGC TCACTGCCAA TTGCTTTCCA
129 1921 GTCGGGAAAC CTGTCGTGCC AGCTGCATTA ATGAATCGGC CAACGCGCGG GGAGAGGCGG
130 1981 TTTGCGTATT GGGCGCTCTT CCGCTTCCTC GCTCACTGAC TCGCTGCGCT CGGTCGTTCG
131 2041 GCTGCGGCGA GCGGTATCAG CTCACTCAAA GGCGGTAATA CGGTTATCCA CAGAATCAGG
132 2101 GGATAACGCA GGAAAGAACA TGTGAGCAAA AGGCCAGCAA AAGGCCAGGA ACCGTAAAAA
133 2161 GGCCGCGTTG CTGGCGTTTT TCCATAGGCT CCGCCCCCCT GACGAGCATC ACAAAAATCG
134 2221 ACGCTCAAGT CAGAGGTGGC GAAACCCGAC AGGACTATAA AGATACCAGG CGTTTCCCCC
135 2281 TGGAAGCTCC CTCGTGCGCT CTCCTGTTCC GACCCTGCCG CTTACCGGAT ACCTGTCCGC
136 2341 CTTTCTCCCT TCGGGAAGCG TGGCGCTTTC TCATAGCTCA CGCTGTAGGT ATCTCAGTTC
137 2401 GGTGTAGGTC GTTCGCTCCA AGCTGGGCTG TGTGCACGAA CCCCCCGTTC AGCCCGACCG
138 2461 CTGCGCCTTA TCCGGTAACT ATCGTCTTGA GTCCAACCCG GTAAGACACG ACTTATCGCC
139 2521 ACTGGCAGCA GCCACTGGTA ACAGGATTAG CAGAGCGAGG TATGTAGGCG GTGCTACAGA
140 2581 GTTCTTGAAG TGGTGGCCTA ACTACGGCTA CACTAGAAGG ACAGTATTTG GTATCTGCGC
141 2641 TCTGCTGAAG CCAGTTACCT TCGGAAAAAG AGTTGGTAGC TCTTGATCCG GCAAACAAAC
142 2701 CACCGCTGGT AGCGGTGGTT TTTTTGTTTG CAAGCAGCAG ATTACGCGCA GAAAAAAAGG
143 2761 ATCTCAAGAA GATCCTTTGA TCTTTTCTAC GGGGTCTGAC GCTCAGTGGA ACGAAAACTC
144 2821 ACGTTAAGGG ATTTTGGTCA TGAGATTATC AAAAAGGATC TTCACCTAGA TCCTTTTAAA
145 2881 TTAAAAATGA AGTTTTAAAT CAATCTAAAG TATATATGAG TAAACTTGGT CTGACAGTTA
146 2941 CCAATGCTTA ATCAGTGAGG CACCTATCTC AGCGATCTGT CTATTTCGTT CATCCATAGT
147 3001 TGCCTGACTC CCCGTCGTGT AGATAACTAC GATACGGGAG GGCTTACCAT CTGGCCCCAG
148 3061 TGCTGCAATG ATACCGCGAG ACCCACGCTC ACCGGCTCCA GATTTATCAG CAATAAACCA
149 3121 GCCAGCCGGA AGGGCCGAGC GCAGAAGTGG TCCTGCAACT TTATCCGCCT CCATCCAGTC
150 3181 TATTAATTGT TGCCGGGAAG CTAGAGTAAG TAGTTCGCCA GTTAATAGTT TGCGCAACGT
151 3241 TGTTGCCATT GCTACAGGCA TCGTGGTGTC ACGCTCGTCG TTTGGTATGG CTTCATTCAG
152 3301 CTCCGGTTCC CAACGATCAA GGCGAGTTAC ATGATCCCCC ATGTTGTGCA AAAAAGCGGT
153 3361 TAGCTCCTTC GGTCCTCCGA TCGTTGTCAG AAGTAAGTTG GCCGCAGTGT TATCACTCAT
154 3421 GGTTATGGCA GCACTGCATA ATTCTCTTAC TGTCATGCCA TCCGTAAGAT GCTTTTCTGT
155 3481 GACTGGTGAG TACTCAACCA AGTCATTCTG AGAATAGTGT ATGCGGCGAC CGAGTTGCTC
156 3541 TTGCCCGGCG TCAATACGGG ATAATACCGC GCCACATAGC AGAACTTTAA AAGTGCTCAT
157 3601 CATTGGAAAA CGTTCTTCGG GGCGAAAACT CTCAAGGATC TTACCGCTGT TGAGATCCAG
158 3661 TTCGATGTAA CCCACTCGTG CACCCAACTG ATCTTCAGCA TCTTTTACTT TCACCAGCGT
159 3721 TTCTGGGTGA GCAAAAACAG GAAGGCAAAA TGCCGCAAAA AAGGGAATAA GGGCGACACG
160 3781 GAAATGTTGA ATACTCATAC TCTTCCTTTT TCAATATTAT TGAAGCATTT ATCAGGGTTA
161 3841 TTGTCTCATG AGCGGATACA TATTTGAATG TATTTAGAAA AATAAACAAA TAGGGGTTCC
162 3901 GCGCACATTT CCCCGAAAAG TGCCACCTGA CGTCTAAGAA ACCATTATTA TCATGACATT
163 3961 AACCTATAAA AATAGGCGTA TCACGAGGCC GCCCCTGCAG CCGAATTATA TTATTTTTGC
164 4021 CAAATAATTT TTAACAAAAG CTCTGAAGTC TTCTTCATTT AAATTCTTAG ATGATACTTC
165 4081 ATCTGGAAAA TTGTCCCAAT TAGTAGCATC ACGCTGTGAG TAAGTTCTAA ACCATTTTTT
166 4141 TATTGTTGTA TTATCTCTAA TCTTACTACT CGATGAGTTT TCGGTATTAT CTCTATTTTT
167 4201 AACTTGGAGC AGGTTCCATT CATTGTTTTT TTCATCATAG TGAATAAAAT CAACTGCTTT
168 4261 AACACTTGTG CCTGAACACC ATATCCATCC GGCGTAATAC GACTCACTAT AGGGAGAGCG
169 4321 GCCGCCAGAT CTTCCGGATG GCTCGAGTTT TTCAGCAAGA T
170 //