Mercurial > repos > tduigou > cloning_simulation
comparison cloning_simulation.py @ 14:16ccb36aa8e3 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Mon, 26 May 2025 11:29:13 +0000 |
| parents | 556649b3f9bb |
| children | fbb241adf6c2 |
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| 13:7d1778f5e164 | 14:16ccb36aa8e3 |
|---|---|
| 79 else: | 79 else: |
| 80 raise ValueError(f"Unsupported assembly type: {assembly_type}") | 80 raise ValueError(f"Unsupported assembly type: {assembly_type}") |
| 81 | 81 |
| 82 new_csvname = "assambly.csv" | 82 new_csvname = "assambly.csv" |
| 83 os.rename(csv_file, new_csvname) | 83 os.rename(csv_file, new_csvname) |
| 84 print (df) | |
| 85 | 84 |
| 86 assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet( | 85 assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet( |
| 87 name="auto_from_filename", | 86 name="auto_from_filename", |
| 88 path=new_csvname, | 87 path=new_csvname, |
| 89 dataframe=None, | 88 dataframe=None, |