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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="tabix" version="0.2.6">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/tabix/tabix-0.2.6.tar.bz2</action>
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7 <action type="shell_command">make</action>
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8 <action type="move_file">
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9 <source>tabix</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>bgzip</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="set_environment">
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
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23 </readme>
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24 </package>
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25
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26
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27 </tool_dependency>
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