Mercurial > repos > stevecassidy > ziptools

annotate zipcollection.xml @ 1:278da6e5ab11 draft default tip

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planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
author stevecassidy
date Mon, 20 Nov 2017 22:51:12 -0500
parents fe887de9b4b5
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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1 <tool id="zipcollection" name="Create a Zip file" version="0.01">
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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2 <description>from one or more datasets</description>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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4 <command interpreter="python">
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278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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5 zipcollection.py --dataset "${",".join(map(str, $dataset))}"
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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6 --identifier "${",".join(map(str, [t.element_identifier + "." + t.extension for t in $dataset]))}"
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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7 #if $extension:
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
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8 --extension $extension
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
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9 #end if
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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10 --output $output
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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11 </command>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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12
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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13 <inputs>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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14 <param name="dataset" format="data" type="data"
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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15 multiple="true" label="DataSets" help="Datasets to include in zip"/>
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278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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16 <param name="extension" type="text" size="10" format="text"
278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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17 label="New extension for files (leave empty to use the dataset type, eg txt, tabbed)"/>
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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18 <param name="job_name" type="text" size="25"
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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19 label="Name of output zip file" value="dataset"/>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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20 </inputs>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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22 <outputs>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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23 <data format="zip" name="output" label="$job_name" />
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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24 </outputs>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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26 <tests>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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27 <!-- can't compare zip file as it changes based on time the test is run
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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28 <test>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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29 <param name="dataset" value="textgrids/1_1308_2_22_020-ch6-speaker16.TextGrid_TextGrid"/>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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30 <param name="job_name" value="test.zip"/>
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278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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31 <output name="output" ftype="zip" file="test.zip"/>
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
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32 </test>
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278da6e5ab11 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
stevecassidy
parents: 0
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33 -->
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
parents:
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34 </tests>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
stevecassidy
parents:
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36 <help>Creates a zip file from a dataset or dataset collection</help>
fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
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fe887de9b4b5 planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty
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38 </tool>