Mercurial > repos > stevecassidy > wrassp
annotate g_cepstrum.xml @ 5:0026cd452d0e draft default tip
planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
| author | stevecassidy |
|---|---|
| date | Sat, 11 Mar 2017 21:37:57 -0500 |
| parents | f188eb0b526d |
| children |
| rev | line source |
|---|---|
|
1
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
1 <tool id="g_cepstrum" name="Compute Cepstrum" version="0.01"> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
2 <description>using wrassp</description> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
3 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
4 <requirements> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
5 <requirement type="package" version="0.1.4">r-wrassp</requirement> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
6 </requirements> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
7 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
8 <command interpreter="bash"> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
9 r_wrapper.sh $__tool_directory__/g_cepstrum.R --args ${wavfile} ${output} |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
10 ${beginTime} ${endTime} ${windowShift} ${window} ${resolution} |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
11 ${fftLength} |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
12 </command> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
13 |
|
3
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
14 <stdio> |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
15 <regex match="Linux: unexpected operator" |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
16 source="stderr" |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
17 level="warning" |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
18 description="conda r-base bash bug" /> |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
19 </stdio> |
|
f188eb0b526d
planemo upload commit 2d22bc12c66a3d1949d4bf4c84e7ce7c4610383c-dirty
stevecassidy
parents:
1
diff
changeset
|
20 |
|
1
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
21 <inputs> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
22 <param name="wavfile" type="data" format="wav" label="Audio File" help="Audio file in WAV format"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
23 <param name="beginTime" type="integer" value="0" label="Start time for analysis (s)"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
24 <param name="endTime" type="integer" value="0" label="End Time for analysis (s) 0 means end of signal"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
25 <param name="windowShift" type="integer" value="5" label="Window Shift (ms)" help="set analysis window shift to dur ms"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
26 <param name="resolution" type="integer" value="40" label="set FFT length to the smallest value which results in a frequency resolution of freq Hz or better"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
27 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
28 <param name="fftLength" type="integer" value="0" label="set FFT length to num points (overrules 'resolution' option)"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
29 <param name="window" type="select"> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
30 <option value="BLACKMAN" selected="true">Blackman</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
31 <option value="RECTANGLE">rectangle</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
32 <option value="PARABOLA">parabola/Riesz/Welch</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
33 <option value="COS" >cosine</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
34 <option value="HANN" >Hann/hanning/cosine^2</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
35 <option value="COS_4" >cosine^4</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
36 <option value="HAMMING" >Hamming</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
37 <option value="BLACK_X" >exact Blackman</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
38 <option value="BLACK_M3" >min. 3-term Blackman-Nuttal</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
39 <option value="BLACK_M4" >min. 4-term Blackman-Nuttal</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
40 <option value="NUTTAL_3" >3-term Nuttal (-18 dB/oct)</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
41 <option value="NUTTAL_4" >4-term Nuttal (-18 dB/oct)</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
42 <option value="KAISER2_0">Kaiser-Bessel (alpha = 2.0)</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
43 <option value="KAISER3_0">Kaiser-Bessel (alpha = 3.0)</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
44 <option value="KAISER4_0">Kaiser-Bessel (alpha = 4.0)</option> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
45 </param> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
46 </inputs> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
47 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
48 <outputs> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
49 <data name="output" format="tabular" label="#echo $wavfile.element_identifier.replace('wav', 'cep') #" /> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
50 </outputs> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
51 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
52 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
53 <tests> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
54 <test> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
55 <param name="wavfile" value="1_1119_2_22_001-ch6-speaker16.wav"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
56 <output name="output" file="1_1119_2_22_001-cepstrum.dat"/> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
57 </test> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
58 </tests> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
59 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
60 <help>Short-term cepstral analysis of the signal using the Fast Fourier Transform. The number of coefficients per output record will also equal the FFT length / 2 + 1 (i.e. be non-mirrored).</help> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
61 |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
62 <citations> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
63 <citation type='bibtex'> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
64 @Manual{, |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
65 title = {wrassp: an R wrapper to the ASSP Library}, |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
66 author = {Lasse Bombien and Raphael Winkelmann and Michel |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
67 Scheffers}, |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
68 year = {2016}, |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
69 note = {R package version 0.1.4}, |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
70 } |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
71 </citation> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
72 </citations> |
|
dbcf9bc275e3
planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff
changeset
|
73 </tool> |
