annotate g_forest.R @ 3:f188eb0b526d draft

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author stevecassidy
date Wed, 14 Dec 2016 21:53:57 -0500
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2 library(wrassp)
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4 args = commandArgs(TRUE)
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5 # args will be like
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6 # ${wavfile} ${output}
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7 # ${beginTime} ${endTime} ${windowShift} ${windowSize} ${effectiveLength}
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8 # ${nominalF1} ${gender} ${estimate} ${order} ${incrOrder} ${numFormants}
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9 # ${window} ${preEmphasis}
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12 if (length(args) != 15) {
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13 print("Wrong number of arguments!")
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14 q("no", status=1)
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15 }
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17 res = forest(args[1], toFile=FALSE, beginTime=as.numeric(args[3]), endTime=as.numeric(args[4]),
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18 windowShift=as.numeric(args[5]),
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19 windowSize=as.numeric(args[6]),
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20 effectiveLength=as.integer(args[7]),
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21 nominalF1=as.numeric(args[8]),
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22 gender=args[9],
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23 estimate=as.integer(args[10]),
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24 order=as.numeric(args[11]), incrOrder=as.numeric(args[12]),
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25 numFormants=as.numeric(args[13]), window=args[14],
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26 preemphasis=as.numeric(args[15])
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27 )
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29 assp_to_tsv(res, args[2])