annotate g_f0.R @ 5:0026cd452d0e draft default tip

planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
author stevecassidy
date Sat, 11 Mar 2017 21:37:57 -0500
parents dbcf9bc275e3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
1
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
2 library(wrassp)
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
3
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
4 args = commandArgs(TRUE)
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
5 # args will be like
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
6 # ${wavfile} ${output}
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
7 # ${beginTime} ${endTime} ${windowShift} ${gender} ${maxF} ${minF} ${minAmp} ${maxZCR}
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
8
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
9
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
10
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
11 if (length(args) != 10) {
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
12 print("Wrong number of arguments!")
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
13 q("no", status=1)
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
14 }
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
15
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
16 res = ksvF0(args[1], toFile=FALSE, beginTime=as.numeric(args[3]), endTime=as.numeric(args[4]),
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
17 windowShift=as.numeric(args[5]),
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
18 gender=args[6],
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
19 maxF=as.numeric(args[7]),
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
20 minF=as.numeric(args[8]),
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
21 minAmp=as.numeric(args[9]),
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
22 maxZCR=as.numeric(args[10])
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
23 )
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
24
dbcf9bc275e3 planemo upload commit 063e049d569aeb45e1008cbf044f2dad850eca3d-dirty
stevecassidy
parents:
diff changeset
25 assp_to_tsv(res, args[2])