Mercurial > repos > stevecassidy > textgrid

annotate query_textgrids.py @ 2:a65223e5ca3a draft default tip

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planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
author stevecassidy
date Sat, 11 Mar 2017 21:36:22 -0500
parents be28ced5c4e0
children
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1 from __future__ import print_function
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2 import json
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3 import argparse
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4 import sys
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5 import os
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6 import tgt
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8
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9 def parser():
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10 parser = argparse.ArgumentParser(description="Find matching segments in a TextGrid")
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11 parser.add_argument('--textgrid', required=True, action="store", type=str, help="TextGrid files (comma separated)")
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12 parser.add_argument('--identifier', required=True, action="store", type=str, help="Dataset identifiers (comma separated)")
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13 parser.add_argument('--tier', required=True, action="store", type=str, help="TextGrid Tier to search")
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14 parser.add_argument('--regex', required=True, action="store", type=str, help="Regular expression matching segments")
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15 parser.add_argument('--output_path', required=True, action="store", type=str, help="Path to output file")
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16 return parser.parse_args()
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18 def main():
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19 args = parser()
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21 tgfiles = args.textgrid.split(',')
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22 identifiers = args.identifier.split(',')
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23 assert len(tgfiles) == len(identifiers), "number of textgrids must match number of identifiers"
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25 pairs = zip(tgfiles, identifiers)
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27 rows = []
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28 for tgfile, identifier in pairs:
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29 tg = tgt.read_textgrid(tgfile)
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30 tier = tg.get_tier_by_name(args.tier)
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31 matches = tier.get_annotations_with_text(args.regex, regex=True)
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33 for m in matches:
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34 rows.append((str(m.start_time), str(m.end_time), str(m.duration()), m.text, identifier))
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36 with open(args.output_path, 'w') as out:
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37 out.write("start\tend\tduration\tlabel\tidentifier\n")
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38 for row in rows:
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39 out.write('\t'.join(row) + '\n')
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43 if __name__ == '__main__':
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44 main()