comparison g_chart_parser.py @ 2:a47980ef2b96 draft

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty

1:fb617586f4b2

import sys
import nltk
import argparse
from nltk.corpus import PlaintextCorpusReader

def arguments():
    parser = argparse.ArgumentParser(description="run NER on a text")
    parser.add_argument('--input', required=True, action="store", type=str, help="input text file")
    parser.add_argument('--grammar', required=True,  action="store", type=str, help="grammar file")
    parser.add_argument('--output', required=True,  action="store", type=str, help="output file path")
    args = parser.parse_args()
    return args


def chart_parse(in_file, grammar_file, out_file):
    with open(in_file, 'r') as fd:
        text = fd.read()

                for t in trees:
                    output.write(t.pformat())
                    output.write('\n')

    except Exception as e:
        message = "Error with parsing. Check the input files are correct and the grammar contains every word in the input sequence. \n----\n" + str(e) + "\n"
        sys.stderr.write(message)
        sys.exit()
    output.close()

if __name__ == '__main__':
    args = arguments()
    chart_parse(args.input, args.grammar, args.output)

2:a47980ef2b96

import sys
import nltk
import argparse


def arguments():
    parser = argparse.ArgumentParser(description="run NER on a text")
    parser.add_argument('--input', required=True, action="store", type=str, help="input text file")
    parser.add_argument('--grammar', required=True, action="store", type=str, help="grammar file")
    parser.add_argument('--output', required=True, action="store", type=str, help="output file path")
    return parser.parse_args()


def chart_parse(in_file, grammar_file, out_file):
    with open(in_file, 'r') as fd:
        text = fd.read()

                for t in trees:
                    output.write(t.pformat())
                    output.write('\n')

    except Exception as e:
        message = """Error with parsing. Check the input files are correct
and the grammar contains every word in the input sequence. \n----\n""" + str(e) + "\n"
        sys.stderr.write(message)
        sys.exit()
    output.close()


if __name__ == '__main__':
    args = arguments()
    chart_parse(args.input, args.grammar, args.output)