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annotate g_collocation.xml @ 3:0df72a8ab095 draft default tip

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planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
author stevecassidy
date Mon, 20 Nov 2017 22:52:11 -0500
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1 <tool id="Collocation" name="Collocation" version="1.0">
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2 <description>Generates a list of the most frequent collocations from an input sequence</description>
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3 <requirements>
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4 <requirement type="package" version="3.2.1">nltk</requirement>
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5 </requirements>
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6
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7 <command interpreter="python">
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8 g_collocation.py --input $input1 --output $tab_file --freq_filter $freq_filter --results $results --coll_type $collocation_type --pos $pos
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9 </command>
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10
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11 <inputs>
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12 <param name="input1" type="data" format="txt" label="Select a suitable input file from your history"/>
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13 <param name="job_name" type="text" size="25"
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14 label="Supply a name for the outputs to remind you what they contain" value="Collocation"/>
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15 <param name="freq_filter" type="integer" label="The minimum number of required occurrences in the corpus"
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16 value="0"/>
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17 <param name="results" type="integer" label="The maximum number of collocations to show in the results"
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18 value="10"/>
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19 <param name="collocation_type" type="select" label="" display="radio">
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20 <option value="bigram">Bigram Collocations</option>
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21 <option value="trigram">Trigram Collocations</option>
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22 </param>
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23 <param name="pos" type="boolean" label="Data input is a set of POS tags"/>
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24 </inputs>
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25 <outputs>
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26 <data format="tabular" name="tab_file" label="${job_name}"/>
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27
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28 </outputs>
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29 <options refresh="True"/>
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30 <help>
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31 <![CDATA[
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33 Input is a text, optionally with POS tags. Output is a list of the top N collocations ordered by frequency.
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34
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35 ]]>
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36
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37 </help>
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38 </tool>