view alveo_item_list_importer.xml @ 16:fd22df0c6d9b draft

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2-dirty

<tool id="alveo_item_list_importer" name="Import Item List Names" version="1.0">
    <description>Retrieves the list of Item List URLs from Alveo.</description>

    <requirements>
        <requirement type="package" version="1.0.4">pyalveo</requirement>
    </requirements>

    <command interpreter="python">
        alveo_item_list_importer.py --api_key $api_key --output $item_list
    </command>


    <inputs>
        <param name="api_key" type="data" format="auth_token" label="API Key" help="Your Alveo API key"/>
        <param name="job_name" type="text" size="25"
               label="Supply a name for the outputs to remind you what they contain" value="Alveo Item Lists"/>
    </inputs>

    <outputs>
        <data format="tabular" name="item_list" label="${job_name}"/>
    </outputs>

    <help>Import Item Lists from Alveo so that you can pass an item list
    to a subsequent tool.  This only retrieves the list of item list names
    and URLs that are available to a user, not the item lists themselves.
    </help>

    <citations>
        <citation type='bibtex'>
            @article{cassidy2014alveo,
              title={The alveo virtual laboratory: a web based repository API},
              author={Cassidy, Steve and Estival, Dominique and Jones, Tim and Sefton, Peter and Burnham, Denis and Burghold, Jared and others},
              year={2014},
              publisher={Reykjavik, Iceland: European Language Resources Association}
            }
        </citation>
    </citations>
</tool>