diff alveo_data_importer.py @ 18:5e1b7d922ea3 draft default tip

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit 53cde5cc9b8c1adcccdc3cfa52d8ca82079aeda7

--- a/alveo_data_importer.py	Sun Dec 03 18:57:51 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-from __future__ import print_function
-import argparse
-import pyalveo
-import sys
-from util import API_URL, write_key
-
-
-def parser():
-    p = argparse.ArgumentParser(description="Downloads documents in an Alveo Item List")
-    p.add_argument('--api_key', required=True, action="store", type=str, help="Alveo API key")
-    p.add_argument('--item_list_url', required=True, action="store", type=str, help="Item List to download")
-    p.add_argument('--output', required=True, action="store", type=str, help="output file name")
-    p.add_argument('--outputkey', required=True, action="store", type=str, help="output file name for API Key")
-    return p.parse_args()
-
-
-def main():
-    args = parser()
-    try:
-        write_key(args.api_key, args.outputkey)
-
-        client = pyalveo.Client(api_key=args.api_key, api_url=API_URL, use_cache=False)
-        item_list = client.get_item_list(args.item_list_url)
-
-        with open(args.output, 'w') as out:
-            out.write("ItemURL\n")
-            for item in item_list:
-                out.write(item + "\n")
-                print(item)
-
-    except pyalveo.APIError as e:
-        print("ERROR: " + str(e), file=sys.stderr)
-        sys.exit(1)
-
-
-if __name__ == '__main__':
-    main()