diff item_list_util.py @ 18:5e1b7d922ea3 draft default tip

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit 53cde5cc9b8c1adcccdc3cfa52d8ca82079aeda7

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/item_list_util.py	Mon Jan 15 18:34:57 2018 -0500
@@ -0,0 +1,63 @@
+
+import json
+
+API_URL = 'https://app.alveo.edu.au'
+
+
+try:
+    from urllib.request import Request, build_opener, HTTPHandler, HTTPError
+    from urllib.parse import urlencode, unquote
+except ImportError:
+    from urllib2 import Request, build_opener, HTTPHandler, HTTPError
+    from urllib import urlencode, unquote
+
+
+def api_request(url, api_key):
+    """ Perform an API GET request to the given URL
+    """
+
+    headers = {'X-API-KEY': api_key, 'Accept': 'application/json'}
+
+    req = Request(url, headers=headers)
+
+    try:
+        opener = build_opener(HTTPHandler())
+        response = opener.open(req)
+    except HTTPError as err:
+        raise APIError(err.code, err.reason, "Error accessing API (url: %s, method: %s)\nData: %s" % (url, req.get_method() or "GET", data or 'None'))
+
+    content = response.read()
+
+    return json.loads(content.decode('utf-8'))
+
+
+def ds_item_lists_options(api_key):
+    """Return options for item lists for this user"""
+
+    fname = api_key.get_file_name()
+    with open(fname) as fd:
+        key = fd.read().strip()
+
+    url = API_URL + "/item_lists"
+    itemlists = api_request(url, key)
+
+    result = [(x['name'], x['item_list_url'], False) for x in itemlists['own']]
+    result.extend([(x['name'], x['item_list_url'], False) for x in itemlists['shared']])
+
+    return result
+
+
+if __name__=='__main__':
+
+    class FakeHistObj:
+
+        def get_file_name(self):
+            return "../../test-data/api-key.dat"
+
+    fake = FakeHistObj()
+
+    il = ds_item_lists_options(fake)
+
+    import pprint
+
+    pprint.pprint(il)