diff alveo_get_item_list.py @ 14:a38315ecf593 draft

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty

--- a/alveo_get_item_list.py	Wed Feb 01 22:34:24 2017 -0500
+++ b/alveo_get_item_list.py	Wed Nov 01 01:18:15 2017 -0400
@@ -1,19 +1,17 @@
 from __future__ import print_function
-import json
 import argparse
 import pyalveo
 import sys
-import os
-from fnmatch import fnmatch
+from util import API_URL
 
-API_URL = 'https://app.alveo.edu.au' # TODO: export constants to a separate module
 
 def parser():
-    parser = argparse.ArgumentParser(description="Downloads documents in an Alveo Item List")
-    parser.add_argument('--api_key', required=True, action="store", type=str, help="Alveo API key")
-    parser.add_argument('--item_list_url', required=True, action="store", type=str, help="Item List to download")
-    parser.add_argument('--output', required=True, action="store", type=str, help="output file name")
-    return parser.parse_args()
+    p = argparse.ArgumentParser(description="Downloads documents in an Alveo Item List")
+    p.add_argument('--api_key', required=True, action="store", type=str, help="Alveo API key")
+    p.add_argument('--item_list_url', required=True, action="store", type=str, help="Item List to download")
+    p.add_argument('--output', required=True, action="store", type=str, help="output file name")
+    return p.parse_args()
+
 
 def main():
     args = parser()
@@ -27,11 +25,11 @@
             out.write("ItemURL\n")
             for item in item_list:
                 out.write(item + "\n")
-                print(item)
 
     except pyalveo.APIError as e:
         print("ERROR: " + str(e), file=sys.stderr)
         sys.exit(1)
 
+
 if __name__ == '__main__':
     main()