diff alveo_api_key.py @ 14:a38315ecf593 draft

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit b5b26e9118f2ad8af109d606746b39a5588f0511-dirty

--- a/alveo_api_key.py	Wed Feb 01 22:34:24 2017 -0500
+++ b/alveo_api_key.py	Wed Nov 01 01:18:15 2017 -0400
@@ -1,36 +1,15 @@
 from __future__ import print_function
 import argparse
-import pyalveo
 import sys
+from util import write_key
 
-API_URL = 'https://app.alveo.edu.au'
 
 def parser():
-    parser = argparse.ArgumentParser(description="Retrieves Alveo Item Lists")
-    parser.add_argument('--api_key', required=True, action="store", type=str, help="Alveo API key")
-    parser.add_argument('--output_path', required=True, action="store", type=str, help="File to store the API key in")
-    return parser.parse_args()
-
-def write_key(api_key, output_path, client_module=pyalveo):
-    """Tests whether an API key is valid and writes it to a file.
-
-    :type api_key: String
-    :param api_key: Alveo API key
+    p = argparse.ArgumentParser(description="Retrieves Alveo Item Lists")
+    p.add_argument('--api_key', required=True, action="store", type=str, help="Alveo API key")
+    p.add_argument('--output_path', required=True, action="store", type=str, help="File to store the API key in")
+    return p.parse_args()
 
-    :type output_path: String
-    :param output_path: Path to the file to store the API key in
-
-    :type client_module: pyalveo.Client
-    :param client_module: Module providing the client (used for testing purposes),
-        defaults to pyalveo
-
-    :raises: pyalveo.APIError if the API request is not successful
-
-    """
-    client = client_module.Client(api_key, API_URL, use_cache=False)
-    outfile = open(output_path, 'w')
-    outfile.write(api_key)
-    outfile.close()
 
 def main():
     args = parser()
@@ -40,5 +19,6 @@
         print("ERROR: " + str(e), file=sys.stderr)
         sys.exit(1)
 
+
 if __name__ == '__main__':
     main()