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planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit 53cde5cc9b8c1adcccdc3cfa52d8ca82079aeda7
author stevecassidy
date Mon, 15 Jan 2018 18:34:57 -0500
parents b69f6d41d17c
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1 <tool id="alveo_api_key_storer" name="Store Alveo API Key" version="1.0">
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2 <description>for use with Alveo tools</description>
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3
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4 <requirements>
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5 <requirement type="package" version="1.0.5">pyalveo</requirement>
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6 </requirements>
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7
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8 <command interpreter="python">
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9 alveo_api_key.py --api_key "$api_key" --output_path $output
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10 </command>
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11
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12 <inputs>
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13 <param name="api_key" type="text" size="30" label="API Key" help="Your Alveo API key"/>
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14 </inputs>
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16 <outputs>
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17 <data format="auth_token" name="output" label="Alveo API key" />
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18 </outputs>
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20 <tests>
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21 <test>
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22 <!-- expect this to fail unless you enter a valid API key here and copy it to
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23 the result file -->
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24 <param name="api_key" value="your api key here" />
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25 <output name="output" file="api-key.dat" compare="contains" />
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26 </test>
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27 </tests>
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29 <help>Stores Alveo API keys for use with the Alveo Galaxy tools.</help>
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30
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31 <citations>
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32 <citation type='bibtex'>
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33 @article{cassidy2014alveo,
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34 title={The alveo virtual laboratory: a web based repository API},
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35 author={Cassidy, Steve and Estival, Dominique and Jones, Tim and Sefton, Peter and Burnham, Denis and Burghold, Jared and others},
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36 year={2014},
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37 publisher={Reykjavik, Iceland: European Language Resources Association}
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38 }
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39 </citation>
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40 </citations>
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41 </tool>