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"planemo upload for repository https://github.com/stephenshank/the_observable_galaxy"
author stephenshank
date Fri, 15 Jul 2022 10:27:44 +0000
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0
1c2fae461adc "planemo upload for repository https://github.com/stephenshank/the_observable_galaxy"
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1 <tool id="observable" name="ObservableHQ" version="0.1.0">
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2 <description>
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3 Select multiple datasets for analysis on the ObservableHQ platform
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4 </description>
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5 <requirements>
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6 <requirement type="package" version="3.10.2">python</requirement>
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7 </requirements>
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8 <command detect_errors="exit_code"><![CDATA[
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9 python '${__tool_directory__}/observable.py'
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10 $observable_form
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11 $__app__.security.encode_id($observable_json.creating_job.history.id)
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12 $observable_json
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13 $__app__.security.encode_id($observable_json.id)
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14 #for $param in $param_dict:
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15 $param['key'] $__app__.security.encode_id($param['val'].id)
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16 #end for
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17 ]]></command>
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18 <inputs>
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19 <param type="text" name="observable_form" label="Username/notebook">
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20 </param>
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21 <repeat name="param_dict" title="Observable parameters">
1c2fae461adc "planemo upload for repository https://github.com/stephenshank/the_observable_galaxy"
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22 <param name="key" type="text" label="Key for this object in the observable sheet">
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23 <sanitizer invalid_char="_">
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24 <valid initial="string.ascii_letters,string.digits">
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25 <add value="_" />
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26 </valid>
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27 </sanitizer>
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28 </param>
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29 <param name="val" type="data" format="data" label="Input file for observable assocaited with above key"/>
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30 </repeat>
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31 </inputs>
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32 <outputs>
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33 <data name="observable_json" format="observablehq"/>
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34 </outputs>
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35 <help><![CDATA[
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36 This tool allows for selecting multiple datasets to be consumed by a desired ObservableHQ notebook.
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37 An associated display application will link out to the notebook.
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38 There are corresponding tools on the ObservableHQ side to easily consume associated datasets for developer productivity.
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39 ]]></help>
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40 </tool>