Mercurial > repos > stephenshank > hyphy_meme

diff hyphy_meme.xml @ 1:e4c2b5776ea6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
author stephenshank
date Mon, 10 Sep 2018 15:14:49 -0400
parents 1a72da7a000d
children e44501a5cdcc
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line diff
--- a/hyphy_meme.xml	Mon Sep 10 14:57:27 2018 -0400
+++ b/hyphy_meme.xml	Mon Sep 10 15:14:49 2018 -0400
@@ -13,6 +13,7 @@
     echo $gencodeid > tool_params &&
     echo `pwd`/meme_input.fa >> tool_params &&
     echo `pwd`/meme_input.nhx >> tool_params &&
+    echo '$branches' >> tool_params &&
     echo '$p_value' >> tool_params &&
     @HYPHY_INVOCATION@ \$HYPHY_LIB/TemplateBatchFiles/SelectionAnalyses/MEME.bf > '$meme_log'
     ]]>
@@ -34,6 +35,12 @@
             <option value="11">Flatworm mitochondrial DNA code</option>
             <option value="12">Blepharisma Nuclear code</option>
         </param>
+        <param name="branches" type="select" label="Set of branches to test">
+            <option value="1">All branches</option>
+            <option value="2">Internal branches</option>
+            <option value="3">Leaf branches</option>
+            <option value="4">Unlabeled branches</option>
+        </param>
         <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value" />
     </inputs>
     <outputs>