Mercurial > repos > stephenshank > hyphy_meme

comparison macros.xml @ 2:e44501a5cdcc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
author stephenshank
date Tue, 30 Oct 2018 10:57:16 -0400
parents 1a72da7a000d
children 3b7f2dbb5c44
comparison
equal deleted inserted replaced
1:e4c2b5776ea6 2:e44501a5cdcc
4 <citations> 4 <citations>
5 <citation type="doi">10.1093/bioinformatics/bti079</citation> 5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
6 <yield /> 6 <yield />
7 </citations> 7 </citations>
8 </xml> 8 </xml>
9 <token name="@VERSION@">2.3.12</token> 9 <token name="@VERSION@">2.3.14</token>
10 <xml name="requirements"> 10 <xml name="requirements">
11 <requirements> 11 <requirements>
12 <requirement type="package" version="@VERSION@">hyphy</requirement> 12 <requirement type="package" version="@VERSION@">hyphy</requirement>
13 <yield /> 13 <yield />
14 </requirements> 14 </requirements>
16 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` && 16 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
17 export HYPHY_PATH=`dirname \$HYPHY` && 17 export HYPHY_PATH=`dirname \$HYPHY` &&
18 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` && 18 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
19 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]> 19 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
20 </token> 20 </token>
21 <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
22 export HYPHY_PATH=`dirname \$HYPHY` &&
23 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
24 cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]>
25 </token>
21 </macros> 26 </macros>