diff macros.xml @ 5:0157130d99c9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty

--- a/macros.xml	Tue Oct 30 10:55:28 2018 -0400
+++ b/macros.xml	Thu Jan 17 14:09:41 2019 -0500
@@ -1,26 +1,21 @@
 <?xml version="1.0"?>
 <macros>
-    <xml name="citations">
-        <citations>
-            <citation type="doi">10.1093/bioinformatics/bti079</citation>
-            <yield />
-        </citations>
-    </xml>
-    <token name="@VERSION@">2.3.14</token>
-    <xml name="requirements">
-        <requirements>
-            <requirement type="package" version="@VERSION@">hyphy</requirement>
-            <yield />
-        </requirements>
-    </xml>
-    <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
+  <xml name="citations">
+    <citations>
+      <citation type="doi">10.1093/bioinformatics/bti079</citation>
+      <yield/>
+    </citations>
+  </xml>
+  <token name="@VERSION@">2.3.14</token>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="@VERSION@">
+      hyphy</requirement>
+      <yield/>
+    </requirements>
+  </xml>
+  <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
 export HYPHY_PATH=`dirname \$HYPHY` &&
 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
-cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
-    </token>
-    <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
-export HYPHY_PATH=`dirname \$HYPHY` &&
-export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
-cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]>
-    </token>
-</macros>
\ No newline at end of file
+cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
+</macros>