Mercurial > repos > stephenshank > hyphy_fade

diff hyphy_fade.xml @ 1:8f04e527e3ac draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f937b10585fe4b760772a6f1a7af20b428be9878-dirty
author stephenshank
date Mon, 11 Feb 2019 14:44:14 -0500
parents bab74ad497ee
children
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--- a/hyphy_fade.xml	Thu Jan 17 09:51:50 2019 -0500
+++ b/hyphy_fade.xml	Mon Feb 11 14:44:14 2019 -0500
@@ -38,8 +38,8 @@
     #end if
     ]]></command>
   <inputs>
-    <param name="input_file" type="data" format="fasta" label="Input FASTA file"/>
-    <param name="input_nhx" type="data" format="nhx" label="Input newick file"/>
+    <param name="input_file" type="data" format="fasta" label="Input amino acid FASTA file"/>
+    <param name="input_nhx" type="data" format="nhx" label="Input rooted newick file"/>
     <param name="branches" type="select" label="Set of branches to test">
       <option value="1">All branches</option>
       <option value="2">Internal branches</option>
@@ -98,7 +98,7 @@
   </inputs>
   <outputs>
     <data name="fade_log" format="txt"/>
-    <data name="fade_output" format="json" from_work_dir="fade_input.fa.FADE.json"/>
+    <data name="fade_output" format="hyphy_json_results" from_work_dir="fade_input.fa.FADE.json"/>
   </outputs>
   <tests>
     <test>